Information for 19-ACCATAGTATAC (Motif 30)


Reverse Opposite:

p-value:1e-8
log p-value:-2.019e+01
Information Content per bp:1.890
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.26%
Number of Background Sequences with motif2.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets125.1 +/- 58.7bp
Average Position of motif in Background56.7 +/- 43.0bp
Strand Bias (log2 ratio + to - strand density)1.5
Multiplicity (# of sites on avg that occur together)3.17
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:1
Score:0.60
Offset:1
Orientation:forward strand
Alignment:ACCATAGTATAC----
-CCATTGTATGCAAAT

PB0132.1_Hbp1_2/Jaspar

Match Rank:2
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----ACCATAGTATAC-
TGTTCCCATTGTGTACT

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:3
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---ACCATAGTATAC
NWAACCACADNN---

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:4
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---ACCATAGTATAC
NAAACCACAG-----

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer

Match Rank:5
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--ACCATAGTATAC
AAACCACAGC----

PB0168.1_Sox14_2/Jaspar

Match Rank:6
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--ACCATAGTATAC-
NNNCCATTGTGTNAN

MA0077.1_SOX9/Jaspar

Match Rank:7
Score:0.54
Offset:1
Orientation:forward strand
Alignment:ACCATAGTATAC
-CCATTGTTC--

MA0002.2_RUNX1/Jaspar

Match Rank:8
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--ACCATAGTATAC
AAACCACAGAN---

MA0511.1_RUNX2/Jaspar

Match Rank:9
Score:0.53
Offset:-3
Orientation:reverse strand
Alignment:---ACCATAGTATAC
CAAACCACAAACCCC

MA0047.2_Foxa2/Jaspar

Match Rank:10
Score:0.51
Offset:1
Orientation:reverse strand
Alignment:ACCATAGTATAC-
-NCTAAGTAAACA