Information for 16-TGATTGAT (Motif 35)


Reverse Opposite:

p-value:1e-7
log p-value:-1.657e+01
Information Content per bp:1.709
Number of Target Sequences with motif90.0
Percentage of Target Sequences with motif3.84%
Number of Background Sequences with motif931.6
Percentage of Background Sequences with motif2.09%
Average Position of motif in Targets120.3 +/- 62.1bp
Average Position of motif in Background117.6 +/- 75.0bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.18
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0070.1_PBX1/Jaspar

Match Rank:1
Score:0.88
Offset:-2
Orientation:reverse strand
Alignment:--TGATTGAT--
TTTGATTGATGN

PB0144.1_Lef1_2/Jaspar

Match Rank:2
Score:0.83
Offset:-4
Orientation:reverse strand
Alignment:----TGATTGAT----
NNANTGATTGATNTTN

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson et al.)/Homer

Match Rank:3
Score:0.82
Offset:-1
Orientation:reverse strand
Alignment:-TGATTGAT---
ATGATKGATGRC

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:4
Score:0.81
Offset:0
Orientation:reverse strand
Alignment:TGATTGAT--
TGATTGATGA

PB0188.1_Tcf7l2_2/Jaspar

Match Rank:5
Score:0.81
Offset:-4
Orientation:reverse strand
Alignment:----TGATTGAT----
NNANTGATTGATNNNN

MA0594.1_Hoxa9/Jaspar

Match Rank:6
Score:0.75
Offset:0
Orientation:reverse strand
Alignment:TGATTGAT---
TGATTTATGGC

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:7
Score:0.75
Offset:0
Orientation:forward strand
Alignment:TGATTGAT----
TGATTRATGGCY

PH0134.1_Pbx1/Jaspar

Match Rank:8
Score:0.69
Offset:-3
Orientation:reverse strand
Alignment:---TGATTGAT------
NNNNNATTGATGNGTGN

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:9
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:TGATTGAT----
TGATTTATGGCC

MA0087.1_Sox5/Jaspar

Match Rank:10
Score:0.68
Offset:2
Orientation:forward strand
Alignment:TGATTGAT-
--ATTGTTA