Information for 25-AGTCTAGT (Motif 38)


Reverse Opposite:

p-value:1e-2
log p-value:-6.390e+00
Information Content per bp:1.911
Number of Target Sequences with motif33.0
Percentage of Target Sequences with motif1.41%
Number of Background Sequences with motif356.1
Percentage of Background Sequences with motif0.80%
Average Position of motif in Targets107.6 +/- 65.2bp
Average Position of motif in Background111.9 +/- 78.6bp
Strand Bias (log2 ratio + to - strand density)1.2
Multiplicity (# of sites on avg that occur together)1.58
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:1
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-AGTCTAGT
TWGTCTGV-

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-AGTCTAGT
CTGTCTGG-

PB0203.1_Zfp691_2/Jaspar

Match Rank:3
Score:0.63
Offset:-8
Orientation:reverse strand
Alignment:--------AGTCTAGT-
NTNNNAGGAGTCTCNTN

PH0040.1_Hmbox1/Jaspar

Match Rank:4
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--AGTCTAGT-------
GAAAACTAGTTAACATC

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:5
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-AGTCTAGT--
AAGGCAAGTGT

PB0060.1_Smad3_1/Jaspar

Match Rank:6
Score:0.62
Offset:-5
Orientation:reverse strand
Alignment:-----AGTCTAGT----
NNTNNTGTCTGGNNTNG

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---AGTCTAGT
VBSYGTCTGG-

PB0090.1_Zbtb12_1/Jaspar

Match Rank:8
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--AGTCTAGT-------
NNGATCTAGAACCTNNN

PB0134.1_Hnf4a_2/Jaspar

Match Rank:9
Score:0.57
Offset:-6
Orientation:forward strand
Alignment:------AGTCTAGT--
GGCAAAAGTCCAATAA

MA0092.1_Hand1::Tcfe2a/Jaspar

Match Rank:10
Score:0.53
Offset:0
Orientation:forward strand
Alignment:AGTCTAGT--
GGTCTGGCAT