Information for 5-CTGTGGCGGGAC (Motif 5)


Reverse Opposite:

p-value:1e-22
log p-value:-5.197e+01
Information Content per bp:1.948
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif0.55%
Number of Background Sequences with motif2.1
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets123.0 +/- 57.2bp
Average Position of motif in Background118.9 +/- 26.6bp
Strand Bias (log2 ratio + to - strand density)1.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0164.1_Smad3_2/Jaspar

Match Rank:1
Score:0.73
Offset:-2
Orientation:reverse strand
Alignment:--CTGTGGCGGGAC---
NAGANTGGCGGGGNGNA

Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer

Match Rank:2
Score:0.70
Offset:2
Orientation:reverse strand
Alignment:CTGTGGCGGGAC--
--GTGGCGTGACNG

E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer

Match Rank:3
Score:0.69
Offset:2
Orientation:forward strand
Alignment:CTGTGGCGGGAC
--CWGGCGGGAA

E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer

Match Rank:4
Score:0.68
Offset:3
Orientation:reverse strand
Alignment:CTGTGGCGGGAC---
---TGGCGGGAAAHB

MA0470.1_E2F4/Jaspar

Match Rank:5
Score:0.67
Offset:3
Orientation:forward strand
Alignment:CTGTGGCGGGAC--
---GGGCGGGAAGG

MA0516.1_SP2/Jaspar

Match Rank:6
Score:0.67
Offset:-3
Orientation:reverse strand
Alignment:---CTGTGGCGGGAC
GGGNGGGGGCGGGGC

E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer

Match Rank:7
Score:0.67
Offset:4
Orientation:forward strand
Alignment:CTGTGGCGGGAC--
----GGCGGGAARN

MA0471.1_E2F6/Jaspar

Match Rank:8
Score:0.67
Offset:3
Orientation:forward strand
Alignment:CTGTGGCGGGAC--
---GGGCGGGAAGG

POL011.1_XCPE1/Jaspar

Match Rank:9
Score:0.66
Offset:3
Orientation:forward strand
Alignment:CTGTGGCGGGAC-
---GGGCGGGACC

Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:CTGTGGCGGGAC
--ATGGGGTGAT