Information for 3-AAGATGGCGG (Motif 7)


Reverse Opposite:

p-value:1e-20
log p-value:-4.643e+01
Information Content per bp:1.712
Number of Target Sequences with motif127.0
Percentage of Target Sequences with motif5.42%
Number of Background Sequences with motif941.4
Percentage of Background Sequences with motif2.11%
Average Position of motif in Targets111.3 +/- 71.4bp
Average Position of motif in Background119.3 +/- 71.9bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

YY1(Zf)/Promoter/Homer

Match Rank:1
Score:0.91
Offset:-1
Orientation:forward strand
Alignment:-AAGATGGCGG-
CAAGATGGCGGC

MA0095.2_YY1/Jaspar

Match Rank:2
Score:0.87
Offset:-1
Orientation:forward strand
Alignment:-AAGATGGCGG-
CAAGATGGCGGC

PB0164.1_Smad3_2/Jaspar

Match Rank:3
Score:0.71
Offset:-1
Orientation:reverse strand
Alignment:-AAGATGGCGG------
NAGANTGGCGGGGNGNA

MA0461.1_Atoh1/Jaspar

Match Rank:4
Score:0.63
Offset:0
Orientation:forward strand
Alignment:AAGATGGCGG
CAGATGGC--

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:5
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--AAGATGGCGG
AACAGATGGC--

PB0076.1_Sp4_1/Jaspar

Match Rank:6
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---AAGATGGCGG----
NNNAAGGGGGCGGGNNN

PB0009.1_E2F3_1/Jaspar

Match Rank:7
Score:0.61
Offset:0
Orientation:forward strand
Alignment:AAGATGGCGG-----
ATAAGGGCGCGCGAT

POL006.1_BREu/Jaspar

Match Rank:8
Score:0.58
Offset:5
Orientation:reverse strand
Alignment:AAGATGGCGG---
-----GGCGCGCT

PB0008.1_E2F2_1/Jaspar

Match Rank:9
Score:0.58
Offset:0
Orientation:forward strand
Alignment:AAGATGGCGG-----
ATAAAGGCGCGCGAT

MA0516.1_SP2/Jaspar

Match Rank:10
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--AAGATGGCGG---
GGGNGGGGGCGGGGC