Information for 6-GCCACAGAGKCT (Motif 8)


Reverse Opposite:

p-value:1e-19
log p-value:-4.536e+01
Information Content per bp:1.847
Number of Target Sequences with motif18.0
Percentage of Target Sequences with motif0.77%
Number of Background Sequences with motif12.8
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets103.0 +/- 69.7bp
Average Position of motif in Background141.1 +/- 51.8bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0002.2_RUNX1/Jaspar

Match Rank:1
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--GCCACAGAGKCT
AAACCACAGAN---

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:2
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---GCCACAGAGKCT
NWAACCACADNN---

MA0442.1_SOX10/Jaspar

Match Rank:3
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:GCCACAGAGKCT
---ACAAAG---

MA0511.1_RUNX2/Jaspar

Match Rank:4
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---GCCACAGAGKCT
CAAACCACAAACCCC

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer

Match Rank:5
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--GCCACAGAGKCT
AAACCACAGC----

RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer

Match Rank:6
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--GCCACAGAGKCT
AAACCACANN----

PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:7
Score:0.55
Offset:0
Orientation:forward strand
Alignment:GCCACAGAGKCT--
GTCACGCTCNCTGA

PB0130.1_Gm397_2/Jaspar

Match Rank:8
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---GCCACAGAGKCT-
AGCGGCACACACGCAA

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:9
Score:0.53
Offset:-3
Orientation:forward strand
Alignment:---GCCACAGAGKCT
NAAACCACAG-----

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:10
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:GCCACAGAGKCT
VRRACAAWGG--