Information for 3-CTCGGAGA (Motif 15)


Reverse Opposite:

p-value:1e-11
log p-value:-2.588e+01
Information Content per bp:1.793
Number of Target Sequences with motif295.0
Percentage of Target Sequences with motif21.42%
Number of Background Sequences with motif6790.4
Percentage of Background Sequences with motif14.58%
Average Position of motif in Targets144.8 +/- 83.6bp
Average Position of motif in Background147.9 +/- 97.6bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.14
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0138.1_Irf4_2/Jaspar

Match Rank:1
Score:0.61
Offset:-6
Orientation:forward strand
Alignment:------CTCGGAGA-
AGTATTCTCGGTTGC

POL013.1_MED-1/Jaspar

Match Rank:2
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:CTCGGAGA
--CGGAGC

PH0048.1_Hoxa13/Jaspar

Match Rank:3
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----CTCGGAGA----
AAACCTCGTAAAATTT

PB0139.1_Irf5_2/Jaspar

Match Rank:4
Score:0.59
Offset:-6
Orientation:reverse strand
Alignment:------CTCGGAGA-
NNAATTCTCGNTNAN

PB0160.1_Rfxdc2_2/Jaspar

Match Rank:5
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---CTCGGAGA------
CTACTTGGATACGGAAT

PB0140.1_Irf6_2/Jaspar

Match Rank:6
Score:0.58
Offset:-6
Orientation:forward strand
Alignment:------CTCGGAGA-
ACCACTCTCGGTCAC

MA0056.1_MZF1_1-4/Jaspar

Match Rank:7
Score:0.57
Offset:2
Orientation:forward strand
Alignment:CTCGGAGA
--TGGGGA

PH0068.1_Hoxc13/Jaspar

Match Rank:8
Score:0.56
Offset:-4
Orientation:forward strand
Alignment:----CTCGGAGA----
AAAGCTCGTAAAATTT

STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer

Match Rank:9
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--CTCGGAGA--
NTTTCTNAGAAA

PB0158.1_Rfx3_2/Jaspar

Match Rank:10
Score:0.51
Offset:-7
Orientation:forward strand
Alignment:-------CTCGGAGA--------
ACTGACCCTTGGTTACCACAAAG