Information for 5-GCATTCTCAGAA (Motif 2)


Reverse Opposite:

p-value:1e-18
log p-value:-4.347e+01
Information Content per bp:1.968
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif0.73%
Number of Background Sequences with motif2.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets158.2 +/- 58.5bp
Average Position of motif in Background166.4 +/- 63.0bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.20
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer

Match Rank:1
Score:0.76
Offset:2
Orientation:reverse strand
Alignment:GCATTCTCAGAA--
--TTTCTNAGAAAN

MA0519.1_Stat5a::Stat5b/Jaspar

Match Rank:2
Score:0.69
Offset:1
Orientation:forward strand
Alignment:GCATTCTCAGAA
-ATTTCCAAGAA

MA0144.2_STAT3/Jaspar

Match Rank:3
Score:0.68
Offset:2
Orientation:reverse strand
Alignment:GCATTCTCAGAA-
--TTTCCCAGAAN

PB0138.1_Irf4_2/Jaspar

Match Rank:4
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-GCATTCTCAGAA--
AGTATTCTCGGTTGC

MA0137.3_STAT1/Jaspar

Match Rank:5
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:GCATTCTCAGAA-
--TTTCCTGGAAA

MA0518.1_Stat4/Jaspar

Match Rank:6
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-GCATTCTCAGAA-
NNNTTTCCTGGAAA

STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer

Match Rank:7
Score:0.61
Offset:0
Orientation:forward strand
Alignment:GCATTCTCAGAA--
NATTTCCNGGAAAT

MA0463.1_Bcl6/Jaspar

Match Rank:8
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-GCATTCTCAGAA-
NGCTTTCTAGGAAN

Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:GCATTCTCAGAA-
---TTCCNGGAAG

PB0006.1_Bcl6b_1/Jaspar

Match Rank:10
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-GCATTCTCAGAA---
NNNATTCCTCGAAAGN