Information for 14-CGAAACAMTC (Motif 20)


Reverse Opposite:

p-value:1e-9
log p-value:-2.241e+01
Information Content per bp:1.723
Number of Target Sequences with motif48.0
Percentage of Target Sequences with motif3.49%
Number of Background Sequences with motif561.1
Percentage of Background Sequences with motif1.20%
Average Position of motif in Targets157.5 +/- 79.2bp
Average Position of motif in Background144.8 +/- 98.2bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0035.1_Irf5_1/Jaspar

Match Rank:1
Score:0.67
Offset:-6
Orientation:forward strand
Alignment:------CGAAACAMTC
ATAAACCGAAACCAA-

MA0087.1_Sox5/Jaspar

Match Rank:2
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:CGAAACAMTC
--NAACAAT-

PB0036.1_Irf6_1/Jaspar

Match Rank:3
Score:0.66
Offset:-5
Orientation:forward strand
Alignment:-----CGAAACAMTC--
CTGATCGAAACCAAAGT

PB0034.1_Irf4_1/Jaspar

Match Rank:4
Score:0.65
Offset:-5
Orientation:forward strand
Alignment:-----CGAAACAMTC
CGTATCGAAACCAAA

MF0011.1_HMG_class/Jaspar

Match Rank:5
Score:0.64
Offset:3
Orientation:reverse strand
Alignment:CGAAACAMTC
---AACAAT-

PB0121.1_Foxj3_2/Jaspar

Match Rank:6
Score:0.64
Offset:-5
Orientation:forward strand
Alignment:-----CGAAACAMTC--
AACACCAAAACAAAGGA

MA0084.1_SRY/Jaspar

Match Rank:7
Score:0.62
Offset:0
Orientation:forward strand
Alignment:CGAAACAMTC
GTAAACAAT-

IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer

Match Rank:8
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--CGAAACAMTC
ACTGAAACCA--

PB0183.1_Sry_2/Jaspar

Match Rank:9
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---CGAAACAMTC----
TCACGGAACAATAGGTG

PB0037.1_Isgf3g_1/Jaspar

Match Rank:10
Score:0.60
Offset:-6
Orientation:forward strand
Alignment:------CGAAACAMTC
CAAAATCGAAACTAA-