Information for 11-GCATCGGA (Motif 22)


Reverse Opposite:

p-value:1e-9
log p-value:-2.211e+01
Information Content per bp:1.789
Number of Target Sequences with motif142.0
Percentage of Target Sequences with motif10.31%
Number of Background Sequences with motif2767.7
Percentage of Background Sequences with motif5.94%
Average Position of motif in Targets150.4 +/- 80.7bp
Average Position of motif in Background147.0 +/- 93.1bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.11
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0193.1_Tcfe2a_2/Jaspar

Match Rank:1
Score:0.60
Offset:-5
Orientation:reverse strand
Alignment:-----GCATCGGA----
CCNNACCATCTGGCCTN

SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer

Match Rank:2
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-GCATCGGA
ANCAGCTG-

PB0115.1_Ehf_2/Jaspar

Match Rank:3
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-GCATCGGA-------
AAGATCGGAANTNNNA

Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer

Match Rank:4
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---GCATCGGA
ATTGCATCAK-

MA0028.1_ELK1/Jaspar

Match Rank:5
Score:0.58
Offset:0
Orientation:forward strand
Alignment:GCATCGGA--
GAGCCGGAAG

Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer

Match Rank:6
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-GCATCGGA---
NVCAGCTGBBNN

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:7
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-GCATCGGA-
GCCATCTGTT

MA0461.1_Atoh1/Jaspar

Match Rank:8
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-GCATCGGA
GCCATCTG-

Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer

Match Rank:9
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---GCATCGGA
ATTGCATCAT-

Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:GCATCGGA----
--RCCGGAARYN