Information for 17-CTGGAACAGCAC (Motif 24)


Reverse Opposite:

p-value:1e-9
log p-value:-2.157e+01
Information Content per bp:1.879
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif0.87%
Number of Background Sequences with motif32.4
Percentage of Background Sequences with motif0.07%
Average Position of motif in Targets122.7 +/- 83.0bp
Average Position of motif in Background146.2 +/- 69.3bp
Strand Bias (log2 ratio + to - strand density)2.7
Multiplicity (# of sites on avg that occur together)1.83
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:1
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-CTGGAACAGCAC
CCAGGAACAG---

MA0152.1_NFATC2/Jaspar

Match Rank:2
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:CTGGAACAGCAC
-TGGAAAA----

POL010.1_DCE_S_III/Jaspar

Match Rank:3
Score:0.56
Offset:6
Orientation:forward strand
Alignment:CTGGAACAGCAC
------CAGCC-

POL009.1_DCE_S_II/Jaspar

Match Rank:4
Score:0.56
Offset:4
Orientation:reverse strand
Alignment:CTGGAACAGCAC
----CACAGN--

PB0090.1_Zbtb12_1/Jaspar

Match Rank:5
Score:0.54
Offset:-5
Orientation:reverse strand
Alignment:-----CTGGAACAGCAC
NNGATCTAGAACCTNNN

MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer

Match Rank:6
Score:0.54
Offset:4
Orientation:forward strand
Alignment:CTGGAACAGCAC
----AACAGCTG

MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer

Match Rank:7
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-CTGGAACAGCAC
GCTGASTCAGCA-

MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer

Match Rank:8
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:CTGGAACAGCAC
-TGAGTCAGCA-

CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer

Match Rank:9
Score:0.53
Offset:-9
Orientation:reverse strand
Alignment:---------CTGGAACAGCAC
TGGCCANNNNNGGAACTGCA-

PH0157.1_Rhox11_1/Jaspar

Match Rank:10
Score:0.52
Offset:-2
Orientation:reverse strand
Alignment:--CTGGAACAGCAC---
TCNNTTTACAGCGNNNT