Information for 1-NMAAAGCS (Motif 3)


Reverse Opposite:

p-value:1e-15
log p-value:-3.496e+01
Information Content per bp:1.462
Number of Target Sequences with motif472.0
Percentage of Target Sequences with motif34.28%
Number of Background Sequences with motif11468.5
Percentage of Background Sequences with motif24.62%
Average Position of motif in Targets145.2 +/- 80.4bp
Average Position of motif in Background144.8 +/- 90.3bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.30
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0164.1_Nr2e3/Jaspar

Match Rank:1
Score:0.65
Offset:2
Orientation:forward strand
Alignment:NMAAAGCS-
--CAAGCTT

POL010.1_DCE_S_III/Jaspar

Match Rank:2
Score:0.64
Offset:3
Orientation:forward strand
Alignment:NMAAAGCS
---CAGCC

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:3
Score:0.62
Offset:2
Orientation:forward strand
Alignment:NMAAAGCS--
--TAATCCCN

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:4
Score:0.61
Offset:0
Orientation:forward strand
Alignment:NMAAAGCS
GCTAATCC

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:5
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---NMAAAGCS
ACATCAAAGG-

MA0038.1_Gfi1/Jaspar

Match Rank:6
Score:0.60
Offset:1
Orientation:forward strand
Alignment:NMAAAGCS---
-CAAATCACTG

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:7
Score:0.60
Offset:0
Orientation:forward strand
Alignment:NMAAAGCS--
NYTAATCCYB

MA0467.1_Crx/Jaspar

Match Rank:8
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:NMAAAGCS----
-CTAATCCTCTT

MA0523.1_TCF7L2/Jaspar

Match Rank:9
Score:0.59
Offset:-5
Orientation:forward strand
Alignment:-----NMAAAGCS-
AAAGATCAAAGGAA

MA0133.1_BRCA1/Jaspar

Match Rank:10
Score:0.58
Offset:1
Orientation:forward strand
Alignment:NMAAAGCS
-ACAACAC