Information for 24-AGAGAGASAGAG (Motif 30)


Reverse Opposite:

p-value:1e-3
log p-value:-7.630e+00
Information Content per bp:1.531
Number of Target Sequences with motif96.0
Percentage of Target Sequences with motif6.97%
Number of Background Sequences with motif2288.0
Percentage of Background Sequences with motif4.91%
Average Position of motif in Targets149.6 +/- 79.3bp
Average Position of motif in Background147.9 +/- 111.2bp
Strand Bias (log2 ratio + to - strand density)-2.0
Multiplicity (# of sites on avg that occur together)2.05
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0166.1_Sox12_2/Jaspar

Match Rank:1
Score:0.59
Offset:0
Orientation:forward strand
Alignment:AGAGAGASAGAG----
AAACAGACAAAGGAAT

MA0508.1_PRDM1/Jaspar

Match Rank:2
Score:0.57
Offset:0
Orientation:forward strand
Alignment:AGAGAGASAGAG---
AGAAAGTGAAAGTGA

PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer

Match Rank:3
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:AGAGAGASAGAG-
-GAAAGTGAAAGT

IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer

Match Rank:4
Score:0.55
Offset:1
Orientation:forward strand
Alignment:AGAGAGASAGAG-
-GAAAGTGAAAGT

ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:5
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:AGAGAGASAGAG-
-GAAACTGAAACT

IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer

Match Rank:6
Score:0.53
Offset:1
Orientation:forward strand
Alignment:AGAGAGASAGAG-
-GAAASYGAAASY

MA0514.1_Sox3/Jaspar

Match Rank:7
Score:0.52
Offset:3
Orientation:reverse strand
Alignment:AGAGAGASAGAG-
---AAAACAAAGG

MA0050.2_IRF1/Jaspar

Match Rank:8
Score:0.52
Offset:-4
Orientation:reverse strand
Alignment:----AGAGAGASAGAG-----
AAANNGAAAGTGAAAGTAAAN

MA0517.1_STAT2::STAT1/Jaspar

Match Rank:9
Score:0.50
Offset:0
Orientation:reverse strand
Alignment:AGAGAGASAGAG---
GGAAANTGAAACTNA

MA0513.1_SMAD2::SMAD3::SMAD4/Jaspar

Match Rank:10
Score:0.50
Offset:-1
Orientation:reverse strand
Alignment:-AGAGAGASAGAG
AGGTGNCAGACAG