Information for 4-AAACCCGAGG (Motif 6)


Reverse Opposite:

p-value:1e-14
log p-value:-3.267e+01
Information Content per bp:1.558
Number of Target Sequences with motif165.0
Percentage of Target Sequences with motif11.98%
Number of Background Sequences with motif2946.4
Percentage of Background Sequences with motif6.32%
Average Position of motif in Targets141.8 +/- 78.4bp
Average Position of motif in Background142.2 +/- 95.9bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.09
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:1
Score:0.59
Offset:0
Orientation:forward strand
Alignment:AAACCCGAGG
TAATCCCN--

MA0483.1_Gfi1b/Jaspar

Match Rank:2
Score:0.57
Offset:0
Orientation:forward strand
Alignment:AAACCCGAGG-
AAATCACAGCA

MA0038.1_Gfi1/Jaspar

Match Rank:3
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-AAACCCGAGG
CAAATCACTG-

PB0136.1_IRC900814_2/Jaspar

Match Rank:4
Score:0.56
Offset:-4
Orientation:forward strand
Alignment:----AAACCCGAGG--
ATGGAAAGTCGTAAAA

PB0185.1_Tcf1_2/Jaspar

Match Rank:5
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--AAACCCGAGG--
NNTAATCCNGNCNN

PB0138.1_Irf4_2/Jaspar

Match Rank:6
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:AAACCCGAGG-----
GNNACCGAGAATNNN

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:7
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--AAACCCGAGG
GCTAATCC----

PB0024.1_Gcm1_1/Jaspar

Match Rank:8
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--AAACCCGAGG----
TCGTACCCGCATCATT

PH0025.1_Dmbx1/Jaspar

Match Rank:9
Score:0.53
Offset:-5
Orientation:reverse strand
Alignment:-----AAACCCGAGG--
NNNATTAATCCGNTTNA

PB0106.1_Arid5a_2/Jaspar

Match Rank:10
Score:0.53
Offset:-4
Orientation:forward strand
Alignment:----AAACCCGAGG---
CATACAATACGAAATAA