Information for 2-TGTATGCG (Motif 9)


Reverse Opposite:

p-value:1e-12
log p-value:-2.792e+01
Information Content per bp:1.588
Number of Target Sequences with motif211.0
Percentage of Target Sequences with motif15.32%
Number of Background Sequences with motif4333.8
Percentage of Background Sequences with motif9.30%
Average Position of motif in Targets149.9 +/- 82.0bp
Average Position of motif in Background141.5 +/- 91.8bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.10
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:1
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----TGTATGCG---
CCATTGTATGCAAAT

PB0170.1_Sox17_2/Jaspar

Match Rank:2
Score:0.65
Offset:-6
Orientation:reverse strand
Alignment:------TGTATGCG---
NTTNTATGAATGTGNNC

PB0130.1_Gm397_2/Jaspar

Match Rank:3
Score:0.64
Offset:-5
Orientation:reverse strand
Alignment:-----TGTATGCG---
NNGCGTGTGTGCNGCN

PB0208.1_Zscan4_2/Jaspar

Match Rank:4
Score:0.63
Offset:-5
Orientation:reverse strand
Alignment:-----TGTATGCG---
NNNNTTGTGTGCTTNN

PB0024.1_Gcm1_1/Jaspar

Match Rank:5
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-TGTATGCG-------
NNNNATGCGGGTNNNN

MA0032.1_FOXC1/Jaspar

Match Rank:6
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----TGTATGCG
GGTAAGTA----

NRF(NRF)/Promoter/Homer

Match Rank:7
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-TGTATGCG---
GCGCATGCGCAC

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---TGTATGCG
VBSYGTCTGG-

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-TGTATGCG
CTGTCTGG-

Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer

Match Rank:10
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--TGTATGCG-------
NSTGTTTRCWCAGBNNN