| Rank | Motif | Name | P-value | log P-pvalue | q-value (Benjamini) | # Target Sequences with Motif | % of Targets Sequences with Motif | # Background Sequences with Motif | % of Background Sequences with Motif | Motif File |
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| 1 |  | NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer | 1e-3 | -8.747e+00 | 0.0420 | 146.0 | 10.60% | 3653.8 | 7.84% | motif file (matrix) |
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| 2 |  | STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer | 1e-3 | -6.952e+00 | 0.1263 | 86.0 | 6.25% | 2051.1 | 4.40% | motif file (matrix) |
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| 3 |  | STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer | 1e-2 | -6.178e+00 | 0.1825 | 86.0 | 6.25% | 2109.9 | 4.53% | motif file (matrix) |
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| 4 |  | HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer | 1e-2 | -5.881e+00 | 0.1843 | 76.0 | 5.52% | 1843.2 | 3.96% | motif file (matrix) |
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| 5 |  | SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer | 1e-2 | -5.849e+00 | 0.1843 | 784.0 | 56.94% | 24780.6 | 53.19% | motif file (matrix) |
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| 6 |  | Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer | 1e-2 | -5.815e+00 | 0.1843 | 268.0 | 19.46% | 7741.9 | 16.62% | motif file (matrix) |
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| 7 |  | EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer | 1e-2 | -5.688e+00 | 0.1843 | 344.0 | 24.98% | 10196.6 | 21.89% | motif file (matrix) |
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| 8 |  | Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer | 1e-2 | -5.030e+00 | 0.2157 | 85.0 | 6.17% | 2176.9 | 4.67% | motif file (matrix) |
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| 9 |  | Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer | 1e-2 | -5.007e+00 | 0.2157 | 128.0 | 9.30% | 3474.6 | 7.46% | motif file (matrix) |
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| 10 |  | Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer | 1e-2 | -4.873e+00 | 0.2157 | 158.0 | 11.47% | 4415.2 | 9.48% | motif file (matrix) |
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