Information for 19-TAGCATAGGATA (Motif 13)


Reverse Opposite:

p-value:1e-8
log p-value:-1.895e+01
Information Content per bp:1.884
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.64%
Number of Background Sequences with motif2.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets125.0 +/- 44.9bp
Average Position of motif in Background133.8 +/- 24.4bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.20
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0145.1_Pou2f3/Jaspar

Match Rank:1
Score:0.56
Offset:-6
Orientation:reverse strand
Alignment:------TAGCATAGGATA
TNTAATTTGCATACNA--

SD0003.1_at_AC_acceptor/Jaspar

Match Rank:2
Score:0.55
Offset:5
Orientation:reverse strand
Alignment:TAGCATAGGATA----
-----AAGGATATNTN

PH0144.1_Pou2f2/Jaspar

Match Rank:3
Score:0.55
Offset:-6
Orientation:reverse strand
Alignment:------TAGCATAGGATA
TNTAATTTGCATANNN--

Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:4
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--TAGCATAGGATA-
ATTTGCATACAATGG

PB0161.1_Rxra_2/Jaspar

Match Rank:5
Score:0.54
Offset:0
Orientation:forward strand
Alignment:TAGCATAGGATA----
TCGCGAAGGTTGTACT

MA0029.1_Mecom/Jaspar

Match Rank:6
Score:0.52
Offset:1
Orientation:forward strand
Alignment:TAGCATAGGATA---
-AAGATAAGATAACA

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.52
Offset:-2
Orientation:forward strand
Alignment:--TAGCATAGGATA
ATTTGCATAA----

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:8
Score:0.51
Offset:-5
Orientation:forward strand
Alignment:-----TAGCATAGGATA
CCGCATAGCAACGGA--

PB0181.1_Spdef_2/Jaspar

Match Rank:9
Score:0.50
Offset:1
Orientation:reverse strand
Alignment:TAGCATAGGATA-----
-CTACTAGGATGTNNTN

PB0061.1_Sox11_1/Jaspar

Match Rank:10
Score:0.50
Offset:-4
Orientation:forward strand
Alignment:----TAGCATAGGATA-
ATAAGAACAAAGGACTA