Information for 19-GTCAACAAGT (Motif 16)


Reverse Opposite:

p-value:1e-7
log p-value:-1.797e+01
Information Content per bp:1.863
Number of Target Sequences with motif18.0
Percentage of Target Sequences with motif2.30%
Number of Background Sequences with motif112.1
Percentage of Background Sequences with motif0.43%
Average Position of motif in Targets90.9 +/- 68.4bp
Average Position of motif in Background128.1 +/- 89.2bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.24
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer

Match Rank:1
Score:0.76
Offset:-3
Orientation:reverse strand
Alignment:---GTCAACAAGT
TATGTAAACANG-

MA0480.1_Foxo1/Jaspar

Match Rank:2
Score:0.75
Offset:-1
Orientation:reverse strand
Alignment:-GTCAACAAGT
TGTAAACAGGA

Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan et al.)/Homer

Match Rank:3
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:GTCAACAAGT
GTAAACAG--

FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer

Match Rank:4
Score:0.70
Offset:-2
Orientation:reverse strand
Alignment:--GTCAACAAGT
NDGTAAACARRN

MA0031.1_FOXD1/Jaspar

Match Rank:5
Score:0.68
Offset:0
Orientation:forward strand
Alignment:GTCAACAAGT
GTAAACAT--

MA0593.1_FOXP2/Jaspar

Match Rank:6
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--GTCAACAAGT
AAGTAAACAAA-

MA0133.1_BRCA1/Jaspar

Match Rank:7
Score:0.66
Offset:1
Orientation:forward strand
Alignment:GTCAACAAGT
-ACAACAC--

Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer

Match Rank:8
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---GTCAACAAGT
SCTGTCARCACC-

MA0047.2_Foxa2/Jaspar

Match Rank:9
Score:0.66
Offset:-5
Orientation:reverse strand
Alignment:-----GTCAACAAGT
NCTAAGTAAACA---

MA0148.3_FOXA1/Jaspar

Match Rank:10
Score:0.65
Offset:-4
Orientation:reverse strand
Alignment:----GTCAACAAGT-
CAAAGTAAACANNNN