Information for 2-ACACTCATAC (Motif 2)


Reverse Opposite:

p-value:1e-49
log p-value:-1.143e+02
Information Content per bp:1.858
Number of Target Sequences with motif158.0
Percentage of Target Sequences with motif20.18%
Number of Background Sequences with motif1318.1
Percentage of Background Sequences with motif5.02%
Average Position of motif in Targets135.2 +/- 66.7bp
Average Position of motif in Background140.5 +/- 137.4bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.48
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0170.1_Sox17_2/Jaspar

Match Rank:1
Score:0.70
Offset:-4
Orientation:forward strand
Alignment:----ACACTCATAC---
GACCACATTCATACAAT

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:2
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--ACACTCATAC
AASCACTCAA--

MA0503.1_Nkx2-5_(var.2)/Jaspar

Match Rank:3
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--ACACTCATAC
AGCCACTCAAG-

PB0178.1_Sox8_2/Jaspar

Match Rank:4
Score:0.63
Offset:0
Orientation:forward strand
Alignment:ACACTCATAC----
ACATTCATGACACG

MA0122.1_Nkx3-2/Jaspar

Match Rank:5
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-ACACTCATAC
NCCACTTAN--

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:6
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-ACACTCATAC
RSCACTYRAG-

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:7
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--ACACTCATAC
AAGCACTTAA--

MA0462.1_BATF::JUN/Jaspar

Match Rank:8
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:ACACTCATAC-
TGAGTCATTTC

MA0006.1_Arnt::Ahr/Jaspar

Match Rank:9
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:ACACTCATAC
-CACGCA---

Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---ACACTCATAC
GCCACACCCA---