Information for 23-CCTCCAGATC (Motif 22)


Reverse Opposite:

p-value:1e-5
log p-value:-1.203e+01
Information Content per bp:1.884
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif1.66%
Number of Background Sequences with motif92.8
Percentage of Background Sequences with motif0.35%
Average Position of motif in Targets118.6 +/- 80.3bp
Average Position of motif in Background120.5 +/- 101.7bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.42
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0092.1_Hand1::Tcfe2a/Jaspar

Match Rank:1
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:CCTCCAGATC
ATGCCAGACN

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:2
Score:0.63
Offset:1
Orientation:forward strand
Alignment:CCTCCAGATC-
-BTCAAGGTCA

PB0014.1_Esrra_1/Jaspar

Match Rank:3
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-CCTCCAGATC------
TATTCAAGGTCATGCGA

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:4
Score:0.63
Offset:1
Orientation:forward strand
Alignment:CCTCCAGATC-
-NTCAAGGTCA

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:5
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:CCTCCAGATC--
--TCAAGGTCAN

MA0141.2_Esrrb/Jaspar

Match Rank:6
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-CCTCCAGATC-
AGCTCAAGGTCA

PB0077.1_Spdef_1/Jaspar

Match Rank:7
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---CCTCCAGATC---
GTACATCCGGATTTTT

MA0071.1_RORA_1/Jaspar

Match Rank:8
Score:0.61
Offset:1
Orientation:forward strand
Alignment:CCTCCAGATC-
-ATCAAGGTCA

MA0592.1_ESRRA/Jaspar

Match Rank:9
Score:0.60
Offset:2
Orientation:forward strand
Alignment:CCTCCAGATC---
--CCAAGGTCACA

MA0505.1_Nr5a2/Jaspar

Match Rank:10
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--CCTCCAGATC---
AAGTTCAAGGTCAGC