Information for 24-HCTAGWCTAG (Motif 23)


Reverse Opposite:

p-value:1e-4
log p-value:-1.151e+01
Information Content per bp:1.804
Number of Target Sequences with motif18.0
Percentage of Target Sequences with motif2.30%
Number of Background Sequences with motif177.8
Percentage of Background Sequences with motif0.68%
Average Position of motif in Targets145.7 +/- 69.9bp
Average Position of motif in Background121.0 +/- 85.3bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.28
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:1
Score:0.62
Offset:2
Orientation:forward strand
Alignment:HCTAGWCTAG
--TWGTCTGV

PB0200.1_Zfp187_2/Jaspar

Match Rank:2
Score:0.56
Offset:-4
Orientation:forward strand
Alignment:----HCTAGWCTAG--
GAGCCCTTGTCCCTAA

PH0040.1_Hmbox1/Jaspar

Match Rank:3
Score:0.54
Offset:-7
Orientation:reverse strand
Alignment:-------HCTAGWCTAG
GANGTTAACTAGTTTNN

PB0090.1_Zbtb12_1/Jaspar

Match Rank:4
Score:0.53
Offset:-7
Orientation:forward strand
Alignment:-------HCTAGWCTAG
CTAAGGTTCTAGATCAC

PB0185.1_Tcf1_2/Jaspar

Match Rank:5
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:HCTAGWCTAG----
NNTAATCCNGNCNN

PB0060.1_Smad3_1/Jaspar

Match Rank:6
Score:0.50
Offset:-7
Orientation:reverse strand
Alignment:-------HCTAGWCTAG
NNTNNTGTCTGGNNTNG

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.50
Offset:2
Orientation:forward strand
Alignment:HCTAGWCTAG
--CTGTCTGG

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:8
Score:0.50
Offset:-2
Orientation:reverse strand
Alignment:--HCTAGWCTAG
NNACTTGCCTT-

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:9
Score:0.50
Offset:0
Orientation:forward strand
Alignment:HCTAGWCTAG
GCTAATCC--

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.49
Offset:0
Orientation:forward strand
Alignment:HCTAGWCTAG
VBSYGTCTGG