Information for 6-TGCATGCATG (Motif 3)


Reverse Opposite:

p-value:1e-39
log p-value:-9.198e+01
Information Content per bp:1.681
Number of Target Sequences with motif173.0
Percentage of Target Sequences with motif22.09%
Number of Background Sequences with motif1866.2
Percentage of Background Sequences with motif7.11%
Average Position of motif in Targets121.1 +/- 67.2bp
Average Position of motif in Background110.2 +/- 149.2bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.20
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0170.1_Sox17_2/Jaspar

Match Rank:1
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--TGCATGCATG-----
NTTNTATGAATGTGNNC

PB0104.1_Zscan4_1/Jaspar

Match Rank:2
Score:0.64
Offset:-6
Orientation:forward strand
Alignment:------TGCATGCATG-
TACATGTGCACATAAAA

PB0178.1_Sox8_2/Jaspar

Match Rank:3
Score:0.61
Offset:1
Orientation:forward strand
Alignment:TGCATGCATG-----
-ACATTCATGACACG

HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer

Match Rank:4
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:TGCATGCATG
-GCACGTAY-

PH0148.1_Pou3f3/Jaspar

Match Rank:5
Score:0.60
Offset:-7
Orientation:reverse strand
Alignment:-------TGCATGCATG
TNNATTATGCATANNTT

PB0028.1_Hbp1_1/Jaspar

Match Rank:6
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----TGCATGCATG--
ACTATGAATGAATGAT

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer

Match Rank:7
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-TGCATGCATG
TBGCACGCAA-

MA0069.1_Pax6/Jaspar

Match Rank:8
Score:0.59
Offset:0
Orientation:forward strand
Alignment:TGCATGCATG----
TTCACGCATGAGTT

PH0082.1_Irx2/Jaspar

Match Rank:9
Score:0.59
Offset:-5
Orientation:reverse strand
Alignment:-----TGCATGCATG--
ANTNTTACATGTATNTA

MA0006.1_Arnt::Ahr/Jaspar

Match Rank:10
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:TGCATGCATG
--CACGCA--