Information for 13-MCAYAYCACACA (Motif 6)


Reverse Opposite:

p-value:1e-18
log p-value:-4.307e+01
Information Content per bp:1.448
Number of Target Sequences with motif171.0
Percentage of Target Sequences with motif21.84%
Number of Background Sequences with motif2816.1
Percentage of Background Sequences with motif10.72%
Average Position of motif in Targets128.2 +/- 72.6bp
Average Position of motif in Background124.0 +/- 170.6bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.70
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0511.1_RUNX2/Jaspar

Match Rank:1
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:MCAYAYCACACA----
-CAAACCACAAACCCC

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:2
Score:0.62
Offset:1
Orientation:forward strand
Alignment:MCAYAYCACACA-
-NWAACCACADNN

NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:3
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--MCAYAYCACACA--
TGCCAAAATAAACANN

MA0002.2_RUNX1/Jaspar

Match Rank:4
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:MCAYAYCACACA-
--AAACCACAGAN

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:5
Score:0.57
Offset:1
Orientation:forward strand
Alignment:MCAYAYCACACA
-NAAACCACAG-

RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer

Match Rank:6
Score:0.56
Offset:2
Orientation:forward strand
Alignment:MCAYAYCACACA
--AAACCACANN

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer

Match Rank:7
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:MCAYAYCACACA
--AAACCACAGC

PB0208.1_Zscan4_2/Jaspar

Match Rank:8
Score:0.55
Offset:1
Orientation:forward strand
Alignment:MCAYAYCACACA-----
-CGAAGCACACAAAATA

MA0479.1_FOXH1/Jaspar

Match Rank:9
Score:0.54
Offset:1
Orientation:forward strand
Alignment:MCAYAYCACACA
-TCCAATCCACA

MA0033.1_FOXL1/Jaspar

Match Rank:10
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---MCAYAYCACACA
TATACATA-------