Information for 8-GAGCGTGT (Motif 7)


Reverse Opposite:

p-value:1e-15
log p-value:-3.638e+01
Information Content per bp:1.607
Number of Target Sequences with motif183.0
Percentage of Target Sequences with motif23.37%
Number of Background Sequences with motif3327.8
Percentage of Background Sequences with motif12.67%
Average Position of motif in Targets119.8 +/- 69.8bp
Average Position of motif in Background126.5 +/- 135.6bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.30
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0006.1_Arnt::Ahr/Jaspar

Match Rank:1
Score:0.76
Offset:1
Orientation:forward strand
Alignment:GAGCGTGT
-TGCGTG-

PB0130.1_Gm397_2/Jaspar

Match Rank:2
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--GAGCGTGT------
NNGCGTGTGTGCNGCN

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer

Match Rank:3
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:GAGCGTGT--
TTGCGTGCVA

KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer

Match Rank:4
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-GAGCGTGT-
DGGGYGKGGC

MA0259.1_HIF1A::ARNT/Jaspar

Match Rank:5
Score:0.66
Offset:0
Orientation:forward strand
Alignment:GAGCGTGT
GGACGTGC

MA0493.1_Klf1/Jaspar

Match Rank:6
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-GAGCGTGT--
TGGGTGTGGCN

MA0039.2_Klf4/Jaspar

Match Rank:7
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-GAGCGTGT-
TGGGTGGGGC

EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer

Match Rank:8
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--GAGCGTGT--
NTGGGTGTGGCC

PB0039.1_Klf7_1/Jaspar

Match Rank:9
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----GAGCGTGT----
NNAGGGGCGGGGTNNA

Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-GAGCGTGT-
TGGGTGTGGC