Information for 11-CTCTATAT (Motif 8)


Reverse Opposite:

p-value:1e-12
log p-value:-2.822e+01
Information Content per bp:1.896
Number of Target Sequences with motif121.0
Percentage of Target Sequences with motif15.45%
Number of Background Sequences with motif2041.0
Percentage of Background Sequences with motif7.77%
Average Position of motif in Targets136.7 +/- 64.5bp
Average Position of motif in Background131.3 +/- 122.5bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.31
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0033.1_FOXL1/Jaspar

Match Rank:1
Score:0.65
Offset:3
Orientation:reverse strand
Alignment:CTCTATAT---
---TATGTNTA

PB0163.1_Six6_2/Jaspar

Match Rank:2
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---CTCTATAT------
ATGGGATATATCCGCCT

Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:3
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:CTCTATAT----
--CTATTTTTGG

POL012.1_TATA-Box/Jaspar

Match Rank:4
Score:0.61
Offset:-5
Orientation:reverse strand
Alignment:-----CTCTATAT--
NNNNNNCTTTTATAN

MA0108.2_TBP/Jaspar

Match Rank:5
Score:0.61
Offset:-5
Orientation:reverse strand
Alignment:-----CTCTATAT--
NNNNNNCTTTTATAN

Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer

Match Rank:6
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:CTCTATAT-----
-KCTATTTTTRGH

MF0008.1_MADS_class/Jaspar

Match Rank:7
Score:0.60
Offset:0
Orientation:forward strand
Alignment:CTCTATAT--
CCATATATGG

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:8
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---CTCTATAT
AASCACTCAA-

PB0080.1_Tbp_1/Jaspar

Match Rank:9
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---CTCTATAT-----
TCTTTATATATAAATA

PB0002.1_Arid5a_1/Jaspar

Match Rank:10
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---CTCTATAT---
NNTNNCAATATTAG