Information for 11-TCACATAAAAAC (Motif 12)


Reverse Opposite:

p-value:1e-13
log p-value:-3.187e+01
Information Content per bp:1.881
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif5.04%
Number of Background Sequences with motif110.4
Percentage of Background Sequences with motif0.24%
Average Position of motif in Targets150.8 +/- 97.3bp
Average Position of motif in Background184.5 +/- 113.8bp
Strand Bias (log2 ratio + to - strand density)1.7
Multiplicity (# of sites on avg that occur together)1.21
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:1
Score:0.71
Offset:0
Orientation:forward strand
Alignment:TCACATAAAAAC
NCYAATAAAA--

PB0116.1_Elf3_2/Jaspar

Match Rank:2
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--TCACATAAAAAC---
GTTCAAAAAAAAAATTC

PH0078.1_Hoxd13/Jaspar

Match Rank:3
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--TCACATAAAAAC--
CTACCAATAAAATTCT

PH0057.1_Hoxb13/Jaspar

Match Rank:4
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--TCACATAAAAAC--
AACCCAATAAAATTCG

PH0068.1_Hoxc13/Jaspar

Match Rank:5
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---TCACATAAAAAC-
AAAGCTCGTAAAATTT

MF0005.1_Forkhead_class/Jaspar

Match Rank:6
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:TCACATAAAAAC
--AAATAAACA-

POL012.1_TATA-Box/Jaspar

Match Rank:7
Score:0.63
Offset:2
Orientation:forward strand
Alignment:TCACATAAAAAC-----
--GTATAAAAGGCGGGG

MA0108.2_TBP/Jaspar

Match Rank:8
Score:0.63
Offset:2
Orientation:forward strand
Alignment:TCACATAAAAAC-----
--GTATAAAAGGCGGGG

MA0042.1_FOXI1/Jaspar

Match Rank:9
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:TCACATAAAAAC--
--AAACAAACANNC

PH0048.1_Hoxa13/Jaspar

Match Rank:10
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---TCACATAAAAAC-
AAACCTCGTAAAATTT