Information for 12-GGGATAAACTTC (Motif 13)


Reverse Opposite:

p-value:1e-13
log p-value:-3.073e+01
Information Content per bp:1.922
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif2.16%
Number of Background Sequences with motif3.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets225.3 +/- 79.5bp
Average Position of motif in Background149.4 +/- 86.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0121.1_Obox1/Jaspar

Match Rank:1
Score:0.71
Offset:-5
Orientation:forward strand
Alignment:-----GGGATAAACTTC
TTAAGGGGATTAACTAC

PH0123.1_Obox3/Jaspar

Match Rank:2
Score:0.71
Offset:-5
Orientation:forward strand
Alignment:-----GGGATAAACTTC
TGAGGGGGATTAACTAT

PH0124.1_Obox5_1/Jaspar

Match Rank:3
Score:0.68
Offset:-4
Orientation:forward strand
Alignment:----GGGATAAACTTC-
TAGAGGGATTAAATTTC

PH0122.1_Obox2/Jaspar

Match Rank:4
Score:0.68
Offset:-5
Orientation:forward strand
Alignment:-----GGGATAAACTTC
TGAGGGGGATTAACTAT

PH0137.1_Pitx1/Jaspar

Match Rank:5
Score:0.67
Offset:-5
Orientation:forward strand
Alignment:-----GGGATAAACTTC
TTAGAGGGATTAACAAT

PH0139.1_Pitx3/Jaspar

Match Rank:6
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---GGGATAAACTTC-
AGGGGGATTAGCTGCC

PH0125.1_Obox5_2/Jaspar

Match Rank:7
Score:0.64
Offset:-4
Orientation:reverse strand
Alignment:----GGGATAAACTTC-
NANAGGGATTAATTATN

PH0035.1_Gsc/Jaspar

Match Rank:8
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----GGGATAAACTTC-
NNAAGGGATTAACGANT

PH0015.1_Crx/Jaspar

Match Rank:9
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----GGGATAAACTTC
CGTTGGGGATTAGCCT-

PH0130.1_Otx2/Jaspar

Match Rank:10
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----GGGATAAACTTC-
TGTAGGGATTAATTGTC