Information for 15-GTGCAGTTTCCA (Motif 16)


Reverse Opposite:

p-value:1e-11
log p-value:-2.693e+01
Information Content per bp:1.962
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif1.80%
Number of Background Sequences with motif2.1
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets239.2 +/- 86.0bp
Average Position of motif in Background138.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer

Match Rank:1
Score:0.72
Offset:4
Orientation:forward strand
Alignment:GTGCAGTTTCCA--
----ATTTTCCATT

MA0152.1_NFATC2/Jaspar

Match Rank:2
Score:0.65
Offset:5
Orientation:forward strand
Alignment:GTGCAGTTTCCA
-----TTTTCCA

MA0105.3_NFKB1/Jaspar

Match Rank:3
Score:0.63
Offset:1
Orientation:forward strand
Alignment:GTGCAGTTTCCA
-GGGAATTTCCC

MA0107.1_RELA/Jaspar

Match Rank:4
Score:0.63
Offset:1
Orientation:forward strand
Alignment:GTGCAGTTTCCA
-GGGAATTTCC-

PB0033.1_Irf3_1/Jaspar

Match Rank:5
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:GTGCAGTTTCCA-----
---CAGTTTCGNTTCTN

PB0034.1_Irf4_1/Jaspar

Match Rank:6
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:GTGCAGTTTCCA----
-TNTGGTTTCGATACN

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:7
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:GTGCAGTTTCCA
-GGGAATTTCC-

PB0146.1_Mafk_2/Jaspar

Match Rank:8
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--GTGCAGTTTCCA-
CCTTGCAATTTTTNN

BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer

Match Rank:9
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:GTGCAGTTTCCA
BRRCVGTTDN--

MA0101.1_REL/Jaspar

Match Rank:10
Score:0.58
Offset:1
Orientation:forward strand
Alignment:GTGCAGTTTCCA
-GGGGATTTCC-