Information for 16-CAATTCTTAGTG (Motif 17)


Reverse Opposite:

p-value:1e-10
log p-value:-2.490e+01
Information Content per bp:1.966
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif1.80%
Number of Background Sequences with motif3.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets186.4 +/- 72.9bp
Average Position of motif in Background160.4 +/- 91.7bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0172.1_Sox1_2/Jaspar

Match Rank:1
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---CAATTCTTAGTG
CTATAATTGTTAGCG

PB0175.1_Sox4_2/Jaspar

Match Rank:2
Score:0.62
Offset:-7
Orientation:reverse strand
Alignment:-------CAATTCTTAGTG
TNCNNAACAATTTTTNC--

Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:3
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:CAATTCTTAGTG
CTATTTTTGG--

MA0124.1_NKX3-1/Jaspar

Match Rank:4
Score:0.60
Offset:2
Orientation:forward strand
Alignment:CAATTCTTAGTG
--ATACTTA---

PB0165.1_Sox11_2/Jaspar

Match Rank:5
Score:0.60
Offset:-7
Orientation:reverse strand
Alignment:-------CAATTCTTAGTG
NNCNNAACAATTNT-----

MF0010.1_Homeobox_class/Jaspar

Match Rank:6
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:CAATTCTTAGTG
-AATTATT----

MA0087.1_Sox5/Jaspar

Match Rank:7
Score:0.57
Offset:2
Orientation:forward strand
Alignment:CAATTCTTAGTG
--ATTGTTA---

MA0052.2_MEF2A/Jaspar

Match Rank:8
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---CAATTCTTAGTG
NNGCTATTTTTAGCN

PB0066.1_Sox17_1/Jaspar

Match Rank:9
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----CAATTCTTAGTG
NNATNAATTGTTTNN-

PB0166.1_Sox12_2/Jaspar

Match Rank:10
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:CAATTCTTAGTG-----
-ANTCCTTTGTCTNNNN