Information for 2-ACAGAGTTGAAC (Motif 2)


Reverse Opposite:

p-value:1e-19
log p-value:-4.407e+01
Information Content per bp:1.906
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif4.32%
Number of Background Sequences with motif23.9
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets225.0 +/- 89.4bp
Average Position of motif in Background185.9 +/- 115.4bp
Strand Bias (log2 ratio + to - strand density)2.9
Multiplicity (# of sites on avg that occur together)1.42
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0512.1_Rxra/Jaspar

Match Rank:1
Score:0.57
Offset:1
Orientation:forward strand
Alignment:ACAGAGTTGAAC
-CAAAGGTCAGA

POL009.1_DCE_S_II/Jaspar

Match Rank:2
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-ACAGAGTTGAAC
CACAGN-------

MA0442.1_SOX10/Jaspar

Match Rank:3
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:ACAGAGTTGAAC
ACAAAG------

PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:4
Score:0.51
Offset:1
Orientation:forward strand
Alignment:ACAGAGTTGAAC-
-CGGAAGTGAAAC

FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:5
Score:0.50
Offset:-5
Orientation:forward strand
Alignment:-----ACAGAGTTGAAC---
AGTAAACAAAAAAGAACANN

MA0133.1_BRCA1/Jaspar

Match Rank:6
Score:0.50
Offset:3
Orientation:reverse strand
Alignment:ACAGAGTTGAAC
---GTGTTGN--

PB0030.1_Hnf4a_1/Jaspar

Match Rank:7
Score:0.49
Offset:2
Orientation:reverse strand
Alignment:ACAGAGTTGAAC-------
--NNANTTGACCCCTNNNN

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.49
Offset:1
Orientation:forward strand
Alignment:ACAGAGTTGAAC
-CAAAGGTCAG-

MA0017.1_NR2F1/Jaspar

Match Rank:9
Score:0.49
Offset:-4
Orientation:reverse strand
Alignment:----ACAGAGTTGAAC
AGGTTCAAAGGTCA--

MA0114.2_HNF4A/Jaspar

Match Rank:10
Score:0.49
Offset:-4
Orientation:reverse strand
Alignment:----ACAGAGTTGAAC
NAGNNCAAAGTCCAN-