Information for 13-GGKTKTAMAC (Motif 20)


Reverse Opposite:

p-value:1e-8
log p-value:-1.981e+01
Information Content per bp:1.776
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif3.24%
Number of Background Sequences with motif81.8
Percentage of Background Sequences with motif0.18%
Average Position of motif in Targets110.9 +/- 87.0bp
Average Position of motif in Background194.0 +/- 107.5bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:1
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-GGKTKTAMAC
CGGTTTCAAA-

PH0067.1_Hoxc12/Jaspar

Match Rank:2
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---GGKTKTAMAC----
TTAGGTCGTAAAATTTC

MA0157.1_FOXO3/Jaspar

Match Rank:3
Score:0.57
Offset:3
Orientation:forward strand
Alignment:GGKTKTAMAC-
---TGTAAACA

PH0077.1_Hoxd12/Jaspar

Match Rank:4
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---GGKTKTAMAC----
CAAGGTCGTAAAATCTT

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:GGKTKTAMAC--
TGTCTGDCACCT

PH0076.1_Hoxd11/Jaspar

Match Rank:6
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---GGKTKTAMAC----
TAAGGTCGTAAAATCCT

PH0065.1_Hoxc10/Jaspar

Match Rank:7
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---GGKTKTAMAC---
TAAAGTCGTAAAACGT

PB0143.1_Klf7_2/Jaspar

Match Rank:8
Score:0.55
Offset:-5
Orientation:reverse strand
Alignment:-----GGKTKTAMAC--
NNNTNGGGCGTATNNTN

PB0013.1_Eomes_1/Jaspar

Match Rank:9
Score:0.54
Offset:-5
Orientation:forward strand
Alignment:-----GGKTKTAMAC--
GAAAAGGTGTGAAAATT

PH0066.1_Hoxc11/Jaspar

Match Rank:10
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---GGKTKTAMAC---
TAAAGTCGTAAAATAG