Information for 17-GTAMATTTAT (Motif 24)


Reverse Opposite:

p-value:1e-7
log p-value:-1.723e+01
Information Content per bp:1.702
Number of Target Sequences with motif30.0
Percentage of Target Sequences with motif10.79%
Number of Background Sequences with motif1563.5
Percentage of Background Sequences with motif3.39%
Average Position of motif in Targets159.2 +/- 96.6bp
Average Position of motif in Background184.8 +/- 126.3bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

POL012.1_TATA-Box/Jaspar

Match Rank:1
Score:0.73
Offset:-3
Orientation:reverse strand
Alignment:---GTAMATTTAT--
NNNNNNCTTTTATAN

MA0108.2_TBP/Jaspar

Match Rank:2
Score:0.73
Offset:-3
Orientation:reverse strand
Alignment:---GTAMATTTAT--
NNNNNNCTTTTATAN

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:3
Score:0.72
Offset:3
Orientation:reverse strand
Alignment:GTAMATTTAT---
---NTTTTATGAC

MA0465.1_CDX2/Jaspar

Match Rank:4
Score:0.72
Offset:4
Orientation:reverse strand
Alignment:GTAMATTTAT-----
----TTTTATGGCTN

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:5
Score:0.71
Offset:4
Orientation:reverse strand
Alignment:GTAMATTTAT----
----TTTTATTRGN

PH0078.1_Hoxd13/Jaspar

Match Rank:6
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:GTAMATTTAT------
NNANTTTTATTGGNNN

PH0013.1_Cdx2/Jaspar

Match Rank:7
Score:0.70
Offset:1
Orientation:reverse strand
Alignment:GTAMATTTAT-------
-NAATTTTATTACCNNN

PB0198.1_Zfp128_2/Jaspar

Match Rank:8
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-GTAMATTTAT---
TGTATATATATACC

PH0012.1_Cdx1/Jaspar

Match Rank:9
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:GTAMATTTAT-------
-NAATTTTATTACCTNN

PH0057.1_Hoxb13/Jaspar

Match Rank:10
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:GTAMATTTAT------
NNAATTTTATTGGNTN