Information for 3-AGAATCTGCAAG (Motif 3)


Reverse Opposite:

p-value:1e-18
log p-value:-4.341e+01
Information Content per bp:1.530
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif3.60%
Number of Background Sequences with motif11.0
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets199.8 +/- 99.3bp
Average Position of motif in Background147.6 +/- 79.7bp
Strand Bias (log2 ratio + to - strand density)3.5
Multiplicity (# of sites on avg that occur together)1.20
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0146.1_Mafk_2/Jaspar

Match Rank:1
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--AGAATCTGCAAG-
GAAAAAATTGCAAGG

IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer

Match Rank:2
Score:0.61
Offset:1
Orientation:forward strand
Alignment:AGAATCTGCAAG-
-GAAAGTGAAAGT

MA0486.1_HSF1/Jaspar

Match Rank:3
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:AGAATCTGCAAG---
AGAANNTTCTAGAAN

HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer

Match Rank:4
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-AGAATCTGCAAG--
TAGAANVTTCTAGAA

ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:5
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:AGAATCTGCAAG-
-GAAACTGAAACT

HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer

Match Rank:6
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----AGAATCTGCAAG----
TTCTAGAANNTTCCAGAANN

IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer

Match Rank:7
Score:0.57
Offset:1
Orientation:forward strand
Alignment:AGAATCTGCAAG-
-GAAASYGAAASY

MA0050.2_IRF1/Jaspar

Match Rank:8
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----AGAATCTGCAAG-----
AAANNGAAAGTGAAAGTAAAN

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:9
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:AGAATCTGCAAG
-GHATATKCAT-

Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer

Match Rank:10
Score:0.55
Offset:3
Orientation:forward strand
Alignment:AGAATCTGCAAG-
---ATATGCAAAT