Information for 5-TTCGTTGGAAAC (Motif 5)


Reverse Opposite:

p-value:1e-17
log p-value:-3.954e+01
Information Content per bp:1.530
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif2.52%
Number of Background Sequences with motif2.3
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets196.9 +/- 78.9bp
Average Position of motif in Background153.1 +/- 6.0bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer

Match Rank:1
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:TTCGTTGGAAAC
TTCTNNAGAANT

MA0520.1_Stat6/Jaspar

Match Rank:2
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--TTCGTTGGAAAC-
ANTTCTCAGGAANNN

STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer

Match Rank:3
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:TTCGTTGGAAAC
TTCTNMGGAA--

MA0152.1_NFATC2/Jaspar

Match Rank:4
Score:0.63
Offset:5
Orientation:reverse strand
Alignment:TTCGTTGGAAAC
-----TGGAAAA

Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:5
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:TTCGTTGGAAAC
--CSTGGGAAAD

NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer

Match Rank:6
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:TTCGTTGGAAAC-
---AATGGAAAAT

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:7
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-TTCGTTGGAAAC-
TTGCCATGGCAACC

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:8
Score:0.59
Offset:4
Orientation:reverse strand
Alignment:TTCGTTGGAAAC--
----TTTGAAACCG

MA0509.1_Rfx1/Jaspar

Match Rank:9
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--TTCGTTGGAAAC
GTTGCCATGGCAAC

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:10
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-TTCGTTGGAAAC-
TTGCCATGGCAACN