Information for 7-CVCTTTGAGGCC (Motif 7)


Reverse Opposite:

p-value:1e-15
log p-value:-3.598e+01
Information Content per bp:1.774
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif3.96%
Number of Background Sequences with motif32.2
Percentage of Background Sequences with motif0.07%
Average Position of motif in Targets138.2 +/- 83.4bp
Average Position of motif in Background189.5 +/- 101.4bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.09
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:CVCTTTGAGGCC
-CCTTTGATGT-

TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer

Match Rank:2
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:CVCTTTGAGGCC
-CCTTTGAWGT-

Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer

Match Rank:3
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-CVCTTTGAGGCC
TNCCTTTGATGT-

MA0523.1_TCF7L2/Jaspar

Match Rank:4
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-CVCTTTGAGGCC-
TNCCTTTGATCTTN

PB0084.1_Tcf7l2_1/Jaspar

Match Rank:5
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---CVCTTTGAGGCC--
ATTTCCTTTGATCTATA

PB0082.1_Tcf3_1/Jaspar

Match Rank:6
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---CVCTTTGAGGCC--
NNTTCCTTTGATCTANA

PB0040.1_Lef1_1/Jaspar

Match Rank:7
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---CVCTTTGAGGCC--
AATCCCTTTGATCTATC

PB0083.1_Tcf7_1/Jaspar

Match Rank:8
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---CVCTTTGAGGCC--
NNTTCCTTTGATCTNNA

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.58
Offset:7
Orientation:forward strand
Alignment:CVCTTTGAGGCC---
-------AGGCCTNG

MA0002.2_RUNX1/Jaspar

Match Rank:10
Score:0.57
Offset:2
Orientation:forward strand
Alignment:CVCTTTGAGGCC-
--GTCTGTGGTTT