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        If you use plots from MultiQC in a publication or presentation, please cite:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

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        About MultiQC

        This report was generated using MultiQC, version 1.1

        You can see a YouTube video describing how to use MultiQC reports here: https://youtu.be/qPbIlO_KWN0

        For more information about MultiQC, including other videos and extensive documentation, please visit http://multiqc.info

        You can report bugs, suggest improvements and find the source code for MultiQC on GitHub: https://github.com/ewels/MultiQC

        MultiQC is published in Bioinformatics:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

        A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.

        Report generated on 2018-08-23, 19:16 based on data in: /ufrc/riva/ariva/collab/licht/runs/NSD2-E1099K-Project/NSD2_CS_RCHACV_070218_Mohammad/NSD2_CS_RCHACV_070218_Mohammad

        General Statistics

        Showing 217/217 rows and 11/14 columns.
        Sample Name% EfficiencyTotal PeaksTags/PeakFragment LengthTreatment RedundancyInsert Size% Aligned% Dropped% Dups% GCM Seqs
        0.5%
        658
        0
        2C-EZH2
        200
        0.02
        103 bp
        2C-H2AK119ub
        200
        0.02
        101 bp
        2C-H3K27ac
        200
        0.02
        95 bp
        2C-H3K27me3
        200
        0.03
        100 bp
        2C-H3K36me2
        200
        0.02
        102 bp
        2C-NSD2
        200
        0.02
        100 bp
        9B-EZH2
        200
        0.02
        108 bp
        9B-H2AK119ub
        200
        0.02
        122 bp
        9B-H3K27ac
        200
        0.02
        89 bp
        9B-H3K27me3
        200
        0.04
        89 bp
        9B-H3K36me2
        200
        0.02
        109 bp
        9B-NSD2
        200
        0.02
        91 bp
        RCHACV-2C-EZH2.bt2stats
        84.6%
        RCHACV-2C-EZH2_S0_L001_R1_001
        0.8%
        11.2%
        42%
        11.7
        RCHACV-2C-EZH2_S0_L001_R1_001.trim.paired
        10.2%
        42%
        11.1
        RCHACV-2C-EZH2_S0_L001_R2_001
        10.9%
        42%
        11.7
        RCHACV-2C-EZH2_S0_L001_R2_001.trim.paired
        10.1%
        42%
        11.1
        RCHACV-2C-EZH2_S0_L002_R1_001
        0.8%
        11.7%
        42%
        12.0
        RCHACV-2C-EZH2_S0_L002_R1_001.trim.paired
        10.7%
        41%
        11.4
        RCHACV-2C-EZH2_S0_L002_R2_001
        11.5%
        42%
        12.0
        RCHACV-2C-EZH2_S0_L002_R2_001.trim.paired
        10.7%
        41%
        11.4
        RCHACV-2C-EZH2_S0_L003_R1_001
        0.8%
        11.0%
        42%
        11.6
        RCHACV-2C-EZH2_S0_L003_R1_001.trim.paired
        9.9%
        42%
        11.1
        RCHACV-2C-EZH2_S0_L003_R2_001
        11.0%
        42%
        11.6
        RCHACV-2C-EZH2_S0_L003_R2_001.trim.paired
        10.1%
        42%
        11.1
        RCHACV-2C-EZH2_S0_L004_R1_001
        0.8%
        11.6%
        42%
        12.1
        RCHACV-2C-EZH2_S0_L004_R1_001.trim.paired
        10.4%
        41%
        11.5
        RCHACV-2C-EZH2_S0_L004_R2_001
        11.4%
        42%
        12.1
        RCHACV-2C-EZH2_S0_L004_R2_001.trim.paired
        10.5%
        41%
        11.5
        RCHACV-2C-H2AK119ub.bt2stats
        86.8%
        RCHACV-2C-H2AK119ub_S0_L001_R1_001
        0.9%
        6.5%
        42%
        11.1
        RCHACV-2C-H2AK119ub_S0_L001_R1_001.trim.paired
        5.9%
        42%
        10.6
        RCHACV-2C-H2AK119ub_S0_L001_R2_001
        6.3%
        42%
        11.1
        RCHACV-2C-H2AK119ub_S0_L001_R2_001.trim.paired
        5.8%
        42%
        10.6
        RCHACV-2C-H2AK119ub_S0_L002_R1_001
        0.8%
        6.9%
        42%
        11.4
        RCHACV-2C-H2AK119ub_S0_L002_R1_001.trim.paired
        6.3%
        42%
        10.9
        RCHACV-2C-H2AK119ub_S0_L002_R2_001
        6.8%
        42%
        11.4
        RCHACV-2C-H2AK119ub_S0_L002_R2_001.trim.paired
        6.2%
        42%
        10.9
        RCHACV-2C-H2AK119ub_S0_L003_R1_001
        0.8%
        6.5%
        42%
        11.1
        RCHACV-2C-H2AK119ub_S0_L003_R1_001.trim.paired
        5.9%
        42%
        10.6
        RCHACV-2C-H2AK119ub_S0_L003_R2_001
        6.5%
        42%
        11.1
        RCHACV-2C-H2AK119ub_S0_L003_R2_001.trim.paired
        5.9%
        42%
        10.6
        RCHACV-2C-H2AK119ub_S0_L004_R1_001
        0.8%
        6.9%
        42%
        11.6
        RCHACV-2C-H2AK119ub_S0_L004_R1_001.trim.paired
        6.2%
        42%
        11.0
        RCHACV-2C-H2AK119ub_S0_L004_R2_001
        6.8%
        42%
        11.6
        RCHACV-2C-H2AK119ub_S0_L004_R2_001.trim.paired
        6.1%
        42%
        11.0
        RCHACV-2C-H3K27ac.bt2stats
        83.3%
        RCHACV-2C-H3K27ac_S0_L001_R1_001
        0.8%
        3.6%
        42%
        7.5
        RCHACV-2C-H3K27ac_S0_L001_R1_001.trim.paired
        3.3%
        42%
        7.1
        RCHACV-2C-H3K27ac_S0_L001_R2_001
        3.5%
        42%
        7.5
        RCHACV-2C-H3K27ac_S0_L001_R2_001.trim.paired
        3.2%
        42%
        7.1
        RCHACV-2C-H3K27ac_S0_L002_R1_001
        0.7%
        3.7%
        42%
        7.6
        RCHACV-2C-H3K27ac_S0_L002_R1_001.trim.paired
        3.3%
        42%
        7.3
        RCHACV-2C-H3K27ac_S0_L002_R2_001
        3.7%
        42%
        7.6
        RCHACV-2C-H3K27ac_S0_L002_R2_001.trim.paired
        3.3%
        42%
        7.3
        RCHACV-2C-H3K27ac_S0_L003_R1_001
        0.7%
        3.5%
        42%
        7.4
        RCHACV-2C-H3K27ac_S0_L003_R1_001.trim.paired
        3.1%
        42%
        7.1
        RCHACV-2C-H3K27ac_S0_L003_R2_001
        3.5%
        42%
        7.4
        RCHACV-2C-H3K27ac_S0_L003_R2_001.trim.paired
        3.2%
        42%
        7.1
        RCHACV-2C-H3K27ac_S0_L004_R1_001
        0.8%
        3.7%
        42%
        7.7
        RCHACV-2C-H3K27ac_S0_L004_R1_001.trim.paired
        3.3%
        42%
        7.3
        RCHACV-2C-H3K27ac_S0_L004_R2_001
        3.7%
        42%
        7.7
        RCHACV-2C-H3K27ac_S0_L004_R2_001.trim.paired
        3.3%
        42%
        7.3
        RCHACV-2C-H3K27me3.bt2stats
        70.6%
        RCHACV-2C-H3K27me3_S0_L001_R1_001
        0.9%
        5.8%
        43%
        10.1
        RCHACV-2C-H3K27me3_S0_L001_R1_001.trim.paired
        5.3%
        43%
        9.6
        RCHACV-2C-H3K27me3_S0_L001_R2_001
        5.7%
        43%
        10.1
        RCHACV-2C-H3K27me3_S0_L001_R2_001.trim.paired
        5.1%
        42%
        9.6
        RCHACV-2C-H3K27me3_S0_L002_R1_001
        0.8%
        6.1%
        43%
        10.3
        RCHACV-2C-H3K27me3_S0_L002_R1_001.trim.paired
        5.6%
        42%
        9.8
        RCHACV-2C-H3K27me3_S0_L002_R2_001
        5.9%
        43%
        10.3
        RCHACV-2C-H3K27me3_S0_L002_R2_001.trim.paired
        5.4%
        42%
        9.8
        RCHACV-2C-H3K27me3_S0_L003_R1_001
        0.8%
        5.7%
        43%
        10.0
        RCHACV-2C-H3K27me3_S0_L003_R1_001.trim.paired
        5.2%
        43%
        9.6
        RCHACV-2C-H3K27me3_S0_L003_R2_001
        5.7%
        43%
        10.0
        RCHACV-2C-H3K27me3_S0_L003_R2_001.trim.paired
        5.1%
        42%
        9.6
        RCHACV-2C-H3K27me3_S0_L004_R1_001
        0.9%
        6.1%
        43%
        10.5
        RCHACV-2C-H3K27me3_S0_L004_R1_001.trim.paired
        5.5%
        42%
        9.9
        RCHACV-2C-H3K27me3_S0_L004_R2_001
        5.9%
        43%
        10.5
        RCHACV-2C-H3K27me3_S0_L004_R2_001.trim.paired
        5.4%
        42%
        9.9
        RCHACV-2C-H3K36me2.bt2stats
        86.9%
        RCHACV-2C-H3K36me2_S0_L001_R1_001
        0.8%
        6.4%
        41%
        7.8
        RCHACV-2C-H3K36me2_S0_L001_R1_001.trim.paired
        5.9%
        41%
        7.4
        RCHACV-2C-H3K36me2_S0_L001_R2_001
        6.3%
        41%
        7.8
        RCHACV-2C-H3K36me2_S0_L001_R2_001.trim.paired
        5.8%
        41%
        7.4
        RCHACV-2C-H3K36me2_S0_L002_R1_001
        0.8%
        6.8%
        41%
        8.0
        RCHACV-2C-H3K36me2_S0_L002_R1_001.trim.paired
        6.3%
        41%
        7.6
        RCHACV-2C-H3K36me2_S0_L002_R2_001
        6.7%
        41%
        8.0
        RCHACV-2C-H3K36me2_S0_L002_R2_001.trim.paired
        6.2%
        41%
        7.6
        RCHACV-2C-H3K36me2_S0_L003_R1_001
        0.8%
        6.4%
        41%
        7.7
        RCHACV-2C-H3K36me2_S0_L003_R1_001.trim.paired
        5.8%
        41%
        7.4
        RCHACV-2C-H3K36me2_S0_L003_R2_001
        6.4%
        41%
        7.7
        RCHACV-2C-H3K36me2_S0_L003_R2_001.trim.paired
        5.8%
        41%
        7.4
        RCHACV-2C-H3K36me2_S0_L004_R1_001
        0.8%
        6.7%
        41%
        8.0
        RCHACV-2C-H3K36me2_S0_L004_R1_001.trim.paired
        6.1%
        41%
        7.7
        RCHACV-2C-H3K36me2_S0_L004_R2_001
        6.6%
        41%
        8.0
        RCHACV-2C-H3K36me2_S0_L004_R2_001.trim.paired
        6.1%
        41%
        7.7
        RCHACV-2C-NSD2.bt2stats
        86.3%
        RCHACV-2C-NSD2_S0_L001_R1_001
        0.8%
        5.1%
        40%
        8.9
        RCHACV-2C-NSD2_S0_L001_R1_001.trim.paired
        4.6%
        40%
        8.5
        RCHACV-2C-NSD2_S0_L001_R2_001
        5.0%
        40%
        8.9
        RCHACV-2C-NSD2_S0_L001_R2_001.trim.paired
        4.6%
        40%
        8.5
        RCHACV-2C-NSD2_S0_L002_R1_001
        0.7%
        5.4%
        40%
        9.1
        RCHACV-2C-NSD2_S0_L002_R1_001.trim.paired
        4.9%
        40%
        8.7
        RCHACV-2C-NSD2_S0_L002_R2_001
        5.3%
        40%
        9.1
        RCHACV-2C-NSD2_S0_L002_R2_001.trim.paired
        4.9%
        40%
        8.7
        RCHACV-2C-NSD2_S0_L003_R1_001
        0.7%
        5.1%
        40%
        8.9
        RCHACV-2C-NSD2_S0_L003_R1_001.trim.paired
        4.6%
        40%
        8.5
        RCHACV-2C-NSD2_S0_L003_R2_001
        5.2%
        40%
        8.9
        RCHACV-2C-NSD2_S0_L003_R2_001.trim.paired
        4.7%
        40%
        8.5
        RCHACV-2C-NSD2_S0_L004_R1_001
        0.7%
        5.3%
        40%
        9.1
        RCHACV-2C-NSD2_S0_L004_R1_001.trim.paired
        4.8%
        40%
        8.7
        RCHACV-2C-NSD2_S0_L004_R2_001
        5.2%
        40%
        9.1
        RCHACV-2C-NSD2_S0_L004_R2_001.trim.paired
        4.8%
        40%
        8.7
        RCHACV-9B-EZH2.bt2stats
        87.1%
        RCHACV-9B-EZH2_S0_L001_R1_001
        0.9%
        6.0%
        43%
        7.2
        RCHACV-9B-EZH2_S0_L001_R1_001.trim.paired
        5.4%
        43%
        6.8
        RCHACV-9B-EZH2_S0_L001_R2_001
        5.9%
        43%
        7.2
        RCHACV-9B-EZH2_S0_L001_R2_001.trim.paired
        5.4%
        43%
        6.8
        RCHACV-9B-EZH2_S0_L002_R1_001
        0.8%
        6.4%
        43%
        7.3
        RCHACV-9B-EZH2_S0_L002_R1_001.trim.paired
        5.9%
        43%
        7.0
        RCHACV-9B-EZH2_S0_L002_R2_001
        6.3%
        43%
        7.3
        RCHACV-9B-EZH2_S0_L002_R2_001.trim.paired
        5.7%
        43%
        7.0
        RCHACV-9B-EZH2_S0_L003_R1_001
        0.8%
        6.0%
        43%
        7.1
        RCHACV-9B-EZH2_S0_L003_R1_001.trim.paired
        5.4%
        43%
        6.8
        RCHACV-9B-EZH2_S0_L003_R2_001
        6.0%
        43%
        7.1
        RCHACV-9B-EZH2_S0_L003_R2_001.trim.paired
        5.5%
        43%
        6.8
        RCHACV-9B-EZH2_S0_L004_R1_001
        0.8%
        6.4%
        43%
        7.4
        RCHACV-9B-EZH2_S0_L004_R1_001.trim.paired
        5.8%
        43%
        7.0
        RCHACV-9B-EZH2_S0_L004_R2_001
        6.3%
        43%
        7.4
        RCHACV-9B-EZH2_S0_L004_R2_001.trim.paired
        5.8%
        43%
        7.0
        RCHACV-9B-H2AK119ub.bt2stats
        92.8%
        RCHACV-9B-H2AK119ub_S0_L001_R1_001
        1.0%
        5.7%
        42%
        10.8
        RCHACV-9B-H2AK119ub_S0_L001_R1_001.trim.paired
        5.2%
        42%
        10.2
        RCHACV-9B-H2AK119ub_S0_L001_R2_001
        5.5%
        42%
        10.8
        RCHACV-9B-H2AK119ub_S0_L001_R2_001.trim.paired
        5.0%
        42%
        10.2
        RCHACV-9B-H2AK119ub_S0_L002_R1_001
        0.9%
        5.9%
        42%
        11.2
        RCHACV-9B-H2AK119ub_S0_L002_R1_001.trim.paired
        5.4%
        42%
        10.6
        RCHACV-9B-H2AK119ub_S0_L002_R2_001
        5.8%
        42%
        11.2
        RCHACV-9B-H2AK119ub_S0_L002_R2_001.trim.paired
        5.3%
        42%
        10.6
        RCHACV-9B-H2AK119ub_S0_L003_R1_001
        0.9%
        5.7%
        42%
        10.8
        RCHACV-9B-H2AK119ub_S0_L003_R1_001.trim.paired
        5.2%
        42%
        10.3
        RCHACV-9B-H2AK119ub_S0_L003_R2_001
        5.6%
        42%
        10.8
        RCHACV-9B-H2AK119ub_S0_L003_R2_001.trim.paired
        5.1%
        42%
        10.3
        RCHACV-9B-H2AK119ub_S0_L004_R1_001
        0.9%
        6.0%
        42%
        11.3
        RCHACV-9B-H2AK119ub_S0_L004_R1_001.trim.paired
        5.5%
        42%
        10.6
        RCHACV-9B-H2AK119ub_S0_L004_R2_001
        5.9%
        42%
        11.3
        RCHACV-9B-H2AK119ub_S0_L004_R2_001.trim.paired
        5.4%
        42%
        10.6
        RCHACV-9B-H3K27ac.bt2stats
        75.2%
        RCHACV-9B-H3K27ac_S0_L001_R1_001
        0.8%
        4.1%
        44%
        8.0
        RCHACV-9B-H3K27ac_S0_L001_R1_001.trim.paired
        3.8%
        43%
        7.7
        RCHACV-9B-H3K27ac_S0_L001_R2_001
        4.1%
        43%
        8.0
        RCHACV-9B-H3K27ac_S0_L001_R2_001.trim.paired
        3.7%
        43%
        7.7
        RCHACV-9B-H3K27ac_S0_L002_R1_001
        0.7%
        4.4%
        43%
        8.2
        RCHACV-9B-H3K27ac_S0_L002_R1_001.trim.paired
        4.0%
        43%
        7.8
        RCHACV-9B-H3K27ac_S0_L002_R2_001
        4.5%
        43%
        8.2
        RCHACV-9B-H3K27ac_S0_L002_R2_001.trim.paired
        4.0%
        43%
        7.8
        RCHACV-9B-H3K27ac_S0_L003_R1_001
        0.7%
        4.2%
        43%
        8.0
        RCHACV-9B-H3K27ac_S0_L003_R1_001.trim.paired
        3.7%
        43%
        7.6
        RCHACV-9B-H3K27ac_S0_L003_R2_001
        4.2%
        43%
        8.0
        RCHACV-9B-H3K27ac_S0_L003_R2_001.trim.paired
        3.8%
        43%
        7.6
        RCHACV-9B-H3K27ac_S0_L004_R1_001
        0.7%
        4.5%
        43%
        8.2
        RCHACV-9B-H3K27ac_S0_L004_R1_001.trim.paired
        4.1%
        43%
        7.9
        RCHACV-9B-H3K27ac_S0_L004_R2_001
        4.6%
        43%
        8.2
        RCHACV-9B-H3K27ac_S0_L004_R2_001.trim.paired
        4.1%
        43%
        7.9
        RCHACV-9B-H3K27me3.bt2stats
        64.1%
        RCHACV-9B-H3K27me3_S0_L001_R1_001
        0.8%
        6.7%
        45%
        8.8
        RCHACV-9B-H3K27me3_S0_L001_R1_001.trim.paired
        6.0%
        45%
        8.4
        RCHACV-9B-H3K27me3_S0_L001_R2_001
        6.6%
        45%
        8.8
        RCHACV-9B-H3K27me3_S0_L001_R2_001.trim.paired
        6.0%
        44%
        8.4
        RCHACV-9B-H3K27me3_S0_L002_R1_001
        0.8%
        6.9%
        44%
        8.8
        RCHACV-9B-H3K27me3_S0_L002_R1_001.trim.paired
        6.1%
        44%
        8.3
        RCHACV-9B-H3K27me3_S0_L002_R2_001
        6.7%
        44%
        8.8
        RCHACV-9B-H3K27me3_S0_L002_R2_001.trim.paired
        6.1%
        44%
        8.3
        RCHACV-9B-H3K27me3_S0_L003_R1_001
        0.7%
        6.5%
        44%
        8.5
        RCHACV-9B-H3K27me3_S0_L003_R1_001.trim.paired
        5.6%
        44%
        8.1
        RCHACV-9B-H3K27me3_S0_L003_R2_001
        6.5%
        44%
        8.5
        RCHACV-9B-H3K27me3_S0_L003_R2_001.trim.paired
        5.8%
        44%
        8.1
        RCHACV-9B-H3K27me3_S0_L004_R1_001
        0.8%
        7.1%
        44%
        8.9
        RCHACV-9B-H3K27me3_S0_L004_R1_001.trim.paired
        6.3%
        44%
        8.4
        RCHACV-9B-H3K27me3_S0_L004_R2_001
        7.0%
        44%
        8.9
        RCHACV-9B-H3K27me3_S0_L004_R2_001.trim.paired
        6.2%
        44%
        8.4
        RCHACV-9B-H3K36me2.bt2stats
        89.2%
        RCHACV-9B-H3K36me2_S0_L001_R1_001
        0.9%
        6.8%
        42%
        7.0
        RCHACV-9B-H3K36me2_S0_L001_R1_001.trim.paired
        6.2%
        41%
        6.6
        RCHACV-9B-H3K36me2_S0_L001_R2_001
        6.6%
        41%
        7.0
        RCHACV-9B-H3K36me2_S0_L001_R2_001.trim.paired
        6.0%
        41%
        6.6
        RCHACV-9B-H3K36me2_S0_L002_R1_001
        0.8%
        7.2%
        41%
        7.2
        RCHACV-9B-H3K36me2_S0_L002_R1_001.trim.paired
        6.6%
        41%
        6.8
        RCHACV-9B-H3K36me2_S0_L002_R2_001
        7.1%
        42%
        7.2
        RCHACV-9B-H3K36me2_S0_L002_R2_001.trim.paired
        6.5%
        41%
        6.8
        RCHACV-9B-H3K36me2_S0_L003_R1_001
        0.8%
        6.8%
        42%
        7.0
        RCHACV-9B-H3K36me2_S0_L003_R1_001.trim.paired
        6.2%
        41%
        6.6
        RCHACV-9B-H3K36me2_S0_L003_R2_001
        6.7%
        41%
        7.0
        RCHACV-9B-H3K36me2_S0_L003_R2_001.trim.paired
        6.1%
        41%
        6.6
        RCHACV-9B-H3K36me2_S0_L004_R1_001
        0.8%
        7.4%
        41%
        7.2
        RCHACV-9B-H3K36me2_S0_L004_R1_001.trim.paired
        6.7%
        41%
        6.9
        RCHACV-9B-H3K36me2_S0_L004_R2_001
        7.3%
        41%
        7.2
        RCHACV-9B-H3K36me2_S0_L004_R2_001.trim.paired
        6.6%
        41%
        6.9
        RCHACV-9B-NSD2.bt2stats
        78.8%
        RCHACV-9B-NSD2_S0_L001_R1_001
        0.8%
        5.4%
        41%
        9.4
        RCHACV-9B-NSD2_S0_L001_R1_001.trim.paired
        4.9%
        41%
        9.0
        RCHACV-9B-NSD2_S0_L001_R2_001
        5.4%
        41%
        9.4
        RCHACV-9B-NSD2_S0_L001_R2_001.trim.paired
        4.9%
        41%
        9.0
        RCHACV-9B-NSD2_S0_L002_R1_001
        0.7%
        5.7%
        41%
        9.5
        RCHACV-9B-NSD2_S0_L002_R1_001.trim.paired
        5.2%
        41%
        9.1
        RCHACV-9B-NSD2_S0_L002_R2_001
        5.7%
        41%
        9.5
        RCHACV-9B-NSD2_S0_L002_R2_001.trim.paired
        5.1%
        41%
        9.1
        RCHACV-9B-NSD2_S0_L003_R1_001
        0.7%
        5.5%
        41%
        9.3
        RCHACV-9B-NSD2_S0_L003_R1_001.trim.paired
        4.9%
        41%
        9.0
        RCHACV-9B-NSD2_S0_L003_R2_001
        5.5%
        41%
        9.3
        RCHACV-9B-NSD2_S0_L003_R2_001.trim.paired
        5.0%
        41%
        9.0
        RCHACV-9B-NSD2_S0_L004_R1_001
        0.7%
        5.7%
        41%
        9.6
        RCHACV-9B-NSD2_S0_L004_R1_001.trim.paired
        5.1%
        41%
        9.2
        RCHACV-9B-NSD2_S0_L004_R2_001
        5.7%
        41%
        9.6
        RCHACV-9B-NSD2_S0_L004_R2_001.trim.paired
        5.1%
        41%
        9.2

        MACS2

        MACS2 identifies transcription factor binding sites in ChIP-seq data.

        Error - was not able to plot data.

        Picard

        Picard is a set of Java command line tools for manipulating high-throughput sequencing data.

        Insert Size

        Plot shows the number of reads at a given insert size. Reads with different orientations are summed.

        loading..

        Bowtie 2

        Bowtie 2 is an ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequences.

        Please note that single mate alignment counts are halved to tally with pair counts properly.

        loading..

        Trimmomatic

        Trimmomatic is a flexible read trimming tool for Illumina NGS data.

        loading..

        FastQC

        FastQC is a quality control tool for high throughput sequence data, written by Simon Andrews at the Babraham Institute in Cambridge.

        Sequence Quality Histograms

        The mean quality value across each base position in the read. See the FastQC help.

        Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).

        Per Sequence Quality Scores

        The number of reads with average quality scores. Shows if a subset of reads has poor quality. See the FastQC help.

        Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).

        Per Base Sequence Content

        The proportion of each base position for which each of the four normal DNA bases has been called. See the FastQC help.

        Click a sample row to see a line plot for that dataset.
        Rollover for sample name
        Position: -
        %T: -
        %C: -
        %A: -
        %G: -

        Per Sequence GC Content

        The average GC content of reads. Normal random library typically have a roughly normal distribution of GC content. See the FastQC help.

        Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).

        Per Base N Content

        The percentage of base calls at each position for which an N was called. See the FastQC help.

        Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).

        Sequence Length Distribution

        The distribution of fragment sizes (read lengths) found. See the FastQC help.

        Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).

        Sequence Duplication Levels

        The relative level of duplication found for every sequence. See the FastQC help.

        Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).

        Overrepresented sequences

        The total amount of overrepresented sequences found in each library. See the FastQC help for further information.

        192 samples had less than 1% of reads made up of overrepresented sequences

        Adapter Content

        The cumulative percentage count of the proportion of your library which has seen each of the adapter sequences at each position. See the FastQC help. Only samples with ≥ 0.1% adapter contamination are shown.

        Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).

        MultiQC v1.1 - Written by Phil Ewels, available on GitHub.

        This report uses HighCharts, jQuery, jQuery UI, Bootstrap, FileSaver.js and clipboard.js.