Information for 11-GCTTTAGG (Motif 11)


Reverse Opposite:

p-value:1e-68
log p-value:-1.580e+02
Information Content per bp:1.594
Number of Target Sequences with motif13092.0
Percentage of Target Sequences with motif50.01%
Number of Background Sequences with motif11526.3
Percentage of Background Sequences with motif44.60%
Average Position of motif in Targets154.4 +/- 87.6bp
Average Position of motif in Background152.3 +/- 93.1bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.18
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer

Match Rank:1
Score:0.58
Offset:0
Orientation:forward strand
Alignment:GCTTTAGG----
SCCTSAGGSCAW

AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer

Match Rank:2
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:GCTTTAGG----
GCCTCAGGGCAT

MA0003.2_TFAP2A/Jaspar

Match Rank:3
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----GCTTTAGG---
CATTGCCTCAGGGCA

MA0524.1_TFAP2C/Jaspar

Match Rank:4
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----GCTTTAGG---
CATGGCCCCAGGGCA

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:5
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--GCTTTAGG
NGGGATTA--

PB0088.1_Tcfap2e_1/Jaspar

Match Rank:6
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---GCTTTAGG----
ATTGCCTGAGGCAAT

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:7
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-GCTTTAGG---
TGATTTATGGCC

POL010.1_DCE_S_III/Jaspar

Match Rank:8
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-GCTTTAGG
NGCTN----

MA0132.1_Pdx1/Jaspar

Match Rank:9
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:GCTTTAGG
-AATTAG-

MA0164.1_Nr2e3/Jaspar

Match Rank:10
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---GCTTTAGG
CAAGCTT----