Information for 17-ATGGCGGC (Motif 16)


Reverse Opposite:

p-value:1e-57
log p-value:-1.314e+02
Information Content per bp:1.865
Number of Target Sequences with motif2224.0
Percentage of Target Sequences with motif8.50%
Number of Background Sequences with motif1553.5
Percentage of Background Sequences with motif6.01%
Average Position of motif in Targets156.3 +/- 93.6bp
Average Position of motif in Background161.6 +/- 88.6bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

YY1(Zf)/Promoter/Homer

Match Rank:1
Score:0.85
Offset:-4
Orientation:forward strand
Alignment:----ATGGCGGC
CAAGATGGCGGC

MA0095.2_YY1/Jaspar

Match Rank:2
Score:0.81
Offset:-4
Orientation:forward strand
Alignment:----ATGGCGGC
CAAGATGGCGGC

PB0112.1_E2F2_2/Jaspar

Match Rank:3
Score:0.68
Offset:-4
Orientation:reverse strand
Alignment:----ATGGCGGC-----
NNNNTTGGCGCCGANNN

PB0164.1_Smad3_2/Jaspar

Match Rank:4
Score:0.68
Offset:-4
Orientation:reverse strand
Alignment:----ATGGCGGC-----
NAGANTGGCGGGGNGNA

PB0113.1_E2F3_2/Jaspar

Match Rank:5
Score:0.66
Offset:-4
Orientation:reverse strand
Alignment:----ATGGCGGC-----
NNNNTTGGCGCCGANNN

MA0161.1_NFIC/Jaspar

Match Rank:6
Score:0.63
Offset:0
Orientation:forward strand
Alignment:ATGGCGGC
TTGGCA--

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:7
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----ATGGCGGC
GTTAATGGCC--

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:8
Score:0.60
Offset:-5
Orientation:reverse strand
Alignment:-----ATGGCGGC-
TTGCCATGGCAACN

MA0089.1_NFE2L1::MafG/Jaspar

Match Rank:9
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-ATGGCGGC
CATGAC---

POL006.1_BREu/Jaspar

Match Rank:10
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:ATGGCGGC--
--GGCGCGCT