Information for 9-THGGGAGAGCCA (Motif 18)


Reverse Opposite:

p-value:1e-44
log p-value:-1.025e+02
Information Content per bp:1.762
Number of Target Sequences with motif46.0
Percentage of Target Sequences with motif0.18%
Number of Background Sequences with motif2.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets162.6 +/- 88.4bp
Average Position of motif in Background180.2 +/- 86.8bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer

Match Rank:1
Score:0.66
Offset:1
Orientation:forward strand
Alignment:THGGGAGAGCCA
-DGGGYGKGGC-

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:2
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:THGGGAGAGCCA
--TTGAGTGSTT

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:3
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:THGGGAGAGCCA
-CTYRAGTGSY-

MA0493.1_Klf1/Jaspar

Match Rank:4
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:THGGGAGAGCCA
-TGGGTGTGGCN

MA0503.1_Nkx2-5_(var.2)/Jaspar

Match Rank:5
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:THGGGAGAGCCA
-CTTGAGTGGCT

Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer

Match Rank:6
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:THGGGAGAGCCA
-TGGGTGTGGC-

MA0039.2_Klf4/Jaspar

Match Rank:7
Score:0.60
Offset:1
Orientation:forward strand
Alignment:THGGGAGAGCCA
-TGGGTGGGGC-

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:8
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:THGGGAGAGCCA--
--NTGATTGACAGN

MA0599.1_KLF5/Jaspar

Match Rank:9
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:THGGGAGAGCCA
-GGGGNGGGGC-

EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer

Match Rank:10
Score:0.59
Offset:0
Orientation:forward strand
Alignment:THGGGAGAGCCA
NTGGGTGTGGCC