Information for 18-AGCGTTTA (Motif 20)


Reverse Opposite:

p-value:1e-42
log p-value:-9.675e+01
Information Content per bp:1.625
Number of Target Sequences with motif7930.0
Percentage of Target Sequences with motif30.29%
Number of Background Sequences with motif6852.8
Percentage of Background Sequences with motif26.52%
Average Position of motif in Targets153.1 +/- 87.8bp
Average Position of motif in Background154.0 +/- 93.7bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.18
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0040.1_Foxq1/Jaspar

Match Rank:1
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-AGCGTTTA--
TATTGTTTATT

PH0044.1_Homez/Jaspar

Match Rank:2
Score:0.66
Offset:-5
Orientation:forward strand
Alignment:-----AGCGTTTA----
AAAACATCGTTTTTAAG

MF0005.1_Forkhead_class/Jaspar

Match Rank:3
Score:0.65
Offset:2
Orientation:forward strand
Alignment:AGCGTTTA---
--TGTTTATTT

MA0030.1_FOXF2/Jaspar

Match Rank:4
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:AGCGTTTA------
NTTGTTTACGTTNN

FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer

Match Rank:5
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-AGCGTTTA---
NYYTGTTTACHN

MA0157.1_FOXO3/Jaspar

Match Rank:6
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:AGCGTTTA--
--TGTTTACA

MA0593.1_FOXP2/Jaspar

Match Rank:7
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:AGCGTTTA---
TNTGTTTACTT

MA0031.1_FOXD1/Jaspar

Match Rank:8
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:AGCGTTTA-
-ATGTTTAC

PB0016.1_Foxj1_1/Jaspar

Match Rank:9
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----AGCGTTTA----
NNNNTTTGTTTACNNT

PB0017.1_Foxj3_1/Jaspar

Match Rank:10
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---AGCGTTTA------
NNNTTTGTTTACNTTNN