Information for 20-CGGGACCC (Motif 21)


Reverse Opposite:

p-value:1e-40
log p-value:-9.238e+01
Information Content per bp:1.927
Number of Target Sequences with motif9503.0
Percentage of Target Sequences with motif36.30%
Number of Background Sequences with motif8375.8
Percentage of Background Sequences with motif32.41%
Average Position of motif in Targets153.1 +/- 84.9bp
Average Position of motif in Background152.8 +/- 95.7bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.38
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

POL011.1_XCPE1/Jaspar

Match Rank:1
Score:0.75
Offset:-3
Orientation:forward strand
Alignment:---CGGGACCC
GGGCGGGACC-

PB0156.1_Plagl1_2/Jaspar

Match Rank:2
Score:0.67
Offset:-3
Orientation:reverse strand
Alignment:---CGGGACCC------
NNNNGGTACCCCCCANN

PB0153.1_Nr2f2_2/Jaspar

Match Rank:3
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--CGGGACCC------
NNNNTGACCCGGCGCG

PB0057.1_Rxra_1/Jaspar

Match Rank:4
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---CGGGACCC------
TGTCGTGACCCCTTAAT

PB0157.1_Rara_2/Jaspar

Match Rank:5
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--CGGGACCC------
NNCNTGACCCCGCTCT

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:6
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:CGGGACCC
--TGACCT

PB0052.1_Plagl1_1/Jaspar

Match Rank:7
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----CGGGACCC----
TTGGGGGCGCCCCTAG

MA0056.1_MZF1_1-4/Jaspar

Match Rank:8
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-CGGGACCC
TGGGGA---

PB0025.1_Glis2_1/Jaspar

Match Rank:9
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-CGGGACCC-------
TATCGACCCCCCACAG

PB0118.1_Esrra_2/Jaspar

Match Rank:10
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---CGGGACCC------
NNNNTTGACCCCTNNNN