Information for 16-CCCGTCTTCTGC (Motif 24)


Reverse Opposite:

p-value:1e-35
log p-value:-8.110e+01
Information Content per bp:1.980
Number of Target Sequences with motif39.0
Percentage of Target Sequences with motif0.15%
Number of Background Sequences with motif3.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets157.6 +/- 103.4bp
Average Position of motif in Background122.1 +/- 33.2bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0124.1_Gabpa_2/Jaspar

Match Rank:1
Score:0.63
Offset:1
Orientation:forward strand
Alignment:CCCGTCTTCTGC-----
-CCGTCTTCCCCCTCAC

MA0516.1_SP2/Jaspar

Match Rank:2
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--CCCGTCTTCTGC-
GCCCCGCCCCCTCCC

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-CCCGTCTTCTGC
VBSYGTCTGG---

POL008.1_DCE_S_I/Jaspar

Match Rank:4
Score:0.55
Offset:4
Orientation:forward strand
Alignment:CCCGTCTTCTGC
----GCTTCC--

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.53
Offset:1
Orientation:forward strand
Alignment:CCCGTCTTCTGC
-CTGTCTGG---

MA0461.1_Atoh1/Jaspar

Match Rank:6
Score:0.52
Offset:3
Orientation:reverse strand
Alignment:CCCGTCTTCTGC
---GCCATCTG-

PB0193.1_Tcfe2a_2/Jaspar

Match Rank:7
Score:0.50
Offset:-1
Orientation:reverse strand
Alignment:-CCCGTCTTCTGC----
CCNNACCATCTGGCCTN

PB0106.1_Arid5a_2/Jaspar

Match Rank:8
Score:0.50
Offset:-4
Orientation:reverse strand
Alignment:----CCCGTCTTCTGC-
TNNTTTCGTATTNNANN

SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer

Match Rank:9
Score:0.49
Offset:5
Orientation:reverse strand
Alignment:CCCGTCTTCTGC-
-----CAGCTGNT

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:10
Score:0.49
Offset:3
Orientation:forward strand
Alignment:CCCGTCTTCTGC-
---GCCATCTGTT