Information for 18-GACKGKCACACT (Motif 26)


Reverse Opposite:

p-value:1e-31
log p-value:-7.230e+01
Information Content per bp:1.822
Number of Target Sequences with motif36.0
Percentage of Target Sequences with motif0.14%
Number of Background Sequences with motif3.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets147.7 +/- 84.3bp
Average Position of motif in Background259.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer

Match Rank:1
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:GACKGKCACACT-
---KTTCACACCT

PB0151.1_Myf6_2/Jaspar

Match Rank:2
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---GACKGKCACACT
AGCAACAGCCGCACC

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:3
Score:0.56
Offset:1
Orientation:forward strand
Alignment:GACKGKCACACT
-CCAGGAACAG-

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-GACKGKCACACT
TGTCTGDCACCT-

MA0498.1_Meis1/Jaspar

Match Rank:5
Score:0.55
Offset:0
Orientation:forward strand
Alignment:GACKGKCACACT---
AGCTGTCACTCACCT

MA0100.2_Myb/Jaspar

Match Rank:6
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--GACKGKCACACT
CCAACTGCCA----

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:7
Score:0.53
Offset:0
Orientation:forward strand
Alignment:GACKGKCACACT
GSCTGTCACTCA

MA0513.1_SMAD2::SMAD3::SMAD4/Jaspar

Match Rank:8
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--GACKGKCACACT
CTGTCTGTCACCT-

PB0130.1_Gm397_2/Jaspar

Match Rank:9
Score:0.53
Offset:1
Orientation:forward strand
Alignment:GACKGKCACACT-----
-AGCGGCACACACGCAA

PB0013.1_Eomes_1/Jaspar

Match Rank:10
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:GACKGKCACACT-----
NNTTTTCACACCTTNNN