Information for 13-CTGGAGCTAT (Motif 27)


Reverse Opposite:

p-value:1e-30
log p-value:-7.007e+01
Information Content per bp:1.954
Number of Target Sequences with motif49.0
Percentage of Target Sequences with motif0.19%
Number of Background Sequences with motif5.2
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets157.9 +/- 85.8bp
Average Position of motif in Background112.3 +/- 51.3bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0524.1_TFAP2C/Jaspar

Match Rank:1
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----CTGGAGCTAT-
TGCCCTGGGGCNANN

POL013.1_MED-1/Jaspar

Match Rank:2
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:CTGGAGCTAT
-CGGAGC---

MA0466.1_CEBPB/Jaspar

Match Rank:3
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:CTGGAGCTAT-
ATTGTGCAATA

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:4
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:CTGGAGCTAT--
CTGTTGCTAGGS

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:5
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-CTGGAGCTAT----
NCCGTTGCTANGNGN

MA0510.1_RFX5/Jaspar

Match Rank:6
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-CTGGAGCTAT----
NCTGTTGCCAGGGAG

PB0055.1_Rfx4_1/Jaspar

Match Rank:7
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-CTGGAGCTAT----
NNCGTTGCTATGGNN

PB0126.1_Gata5_2/Jaspar

Match Rank:8
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-CTGGAGCTAT------
GACAGAGATATCAGTGT

Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer

Match Rank:9
Score:0.52
Offset:0
Orientation:forward strand
Alignment:CTGGAGCTAT
MTGATGCAAT

PB0113.1_E2F3_2/Jaspar

Match Rank:10
Score:0.51
Offset:-4
Orientation:reverse strand
Alignment:----CTGGAGCTAT---
NNNNTTGGCGCCGANNN