Information for 22-TCCATTYGAT (Motif 33)


Reverse Opposite:

p-value:1e-17
log p-value:-3.923e+01
Information Content per bp:1.477
Number of Target Sequences with motif140.0
Percentage of Target Sequences with motif0.53%
Number of Background Sequences with motif61.1
Percentage of Background Sequences with motif0.24%
Average Position of motif in Targets160.9 +/- 84.6bp
Average Position of motif in Background157.8 +/- 60.8bp
Strand Bias (log2 ratio + to - strand density)-0.8
Multiplicity (# of sites on avg that occur together)1.86
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:1
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:TCCATTYGAT
BCMATTAG--

PB0040.1_Lef1_1/Jaspar

Match Rank:2
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--TCCATTYGAT-----
AATCCCTTTGATCTATC

PB0084.1_Tcf7l2_1/Jaspar

Match Rank:3
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--TCCATTYGAT-----
ATTTCCTTTGATCTATA

Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer

Match Rank:4
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:TCCATTYGAT--
TNCCTTTGATGT

PH0111.1_Nkx2-2/Jaspar

Match Rank:5
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---TCCATTYGAT----
ATAACCACTTGAAAATT

PB0082.1_Tcf3_1/Jaspar

Match Rank:6
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--TCCATTYGAT-----
NNTTCCTTTGATCTANA

PH0171.1_Nkx2-1/Jaspar

Match Rank:7
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---TCCATTYGAT---
TAAGCCACTTGAAATT

PB0083.1_Tcf7_1/Jaspar

Match Rank:8
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--TCCATTYGAT-----
NNTTCCTTTGATCTNNA

PH0114.1_Nkx2-5/Jaspar

Match Rank:9
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---TCCATTYGAT---
TAAGCCACTTGAATTT

MA0151.1_ARID3A/Jaspar

Match Rank:10
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:TCCATTYGAT
----TTTAAT