Information for 1-AGAGCTGTTT (Motif 5)


Reverse Opposite:

p-value:1e-103
log p-value:-2.377e+02
Information Content per bp:1.532
Number of Target Sequences with motif13469.0
Percentage of Target Sequences with motif51.45%
Number of Background Sequences with motif11574.3
Percentage of Background Sequences with motif44.78%
Average Position of motif in Targets151.2 +/- 86.8bp
Average Position of motif in Background153.2 +/- 93.1bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.46
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer

Match Rank:1
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:AGAGCTGTTT
ACAGCTGTTV

MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer

Match Rank:2
Score:0.70
Offset:1
Orientation:reverse strand
Alignment:AGAGCTGTTT
-CAGCTGTT-

Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan et al.)/Homer

Match Rank:3
Score:0.67
Offset:4
Orientation:forward strand
Alignment:AGAGCTGTTT--
----CTGTTTAC

MA0480.1_Foxo1/Jaspar

Match Rank:4
Score:0.66
Offset:2
Orientation:forward strand
Alignment:AGAGCTGTTT---
--TCCTGTTTACA

Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer

Match Rank:5
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:AGAGCTGTTT
HCAGCTGDTN

BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer

Match Rank:6
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:AGAGCTGTTT-
-BRRCVGTTDN

MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer

Match Rank:7
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-AGAGCTGTTT-
AGCAGCTGCTNN

MA0521.1_Tcf12/Jaspar

Match Rank:8
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--AGAGCTGTTT
NNGCAGCTGTT-

Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer

Match Rank:9
Score:0.65
Offset:0
Orientation:forward strand
Alignment:AGAGCTGTTT
ACAGCTGTTN

Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer

Match Rank:10
Score:0.64
Offset:0
Orientation:forward strand
Alignment:AGAGCTGTTT
NCAGCTGCTG