Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 26180)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 25843)	% of Background Sequences with Motif
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-102	-2.353e+02	0.0000	6613.0	25.26%	5117.0	19.80%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-96	-2.214e+02	0.0000	5876.0	22.45%	4494.1	17.39%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-81	-1.874e+02	0.0000	7059.0	26.97%	5670.8	21.94%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-79	-1.832e+02	0.0000	4612.0	17.62%	3479.8	13.46%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e-79	-1.820e+02	0.0000	912.0	3.48%	452.4	1.75%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e-75	-1.743e+02	0.0000	744.0	2.84%	345.2	1.34%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e-73	-1.686e+02	0.0000	5548.0	21.19%	4357.9	16.86%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e-70	-1.622e+02	0.0000	7178.0	27.42%	5868.6	22.71%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e-64	-1.480e+02	0.0000	471.0	1.80%	190.2	0.74%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-63	-1.471e+02	0.0000	5602.0	21.40%	4477.6	17.32%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-63	-1.471e+02	0.0000	3645.0	13.92%	2731.5	10.57%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-61	-1.417e+02	0.0000	4938.0	18.86%	3895.4	15.07%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-58	-1.343e+02	0.0000	3625.0	13.85%	2750.2	10.64%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-53	-1.240e+02	0.0000	6596.0	25.20%	5477.5	21.19%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-53	-1.233e+02	0.0000	5620.0	21.47%	4580.9	17.72%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-52	-1.216e+02	0.0000	3317.0	12.67%	2517.1	9.74%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-50	-1.170e+02	0.0000	3329.0	12.72%	2541.2	9.83%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-41	-9.636e+01	0.0000	2829.0	10.81%	2165.1	8.38%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	MACAGGAAGT	1e-41	-9.580e+01	0.0000	1219.0	4.66%	800.6	3.10%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-41	-9.514e+01	0.0000	2018.0	7.71%	1466.5	5.67%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e-40	-9.397e+01	0.0000	10506.0	40.13%	9332.9	36.11%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e-40	-9.288e+01	0.0000	7048.0	26.92%	6039.2	23.37%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-39	-9.178e+01	0.0000	15125.0	57.78%	13877.0	53.69%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-38	-8.940e+01	0.0000	232.0	0.89%	84.5	0.33%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-38	-8.912e+01	0.0000	2621.0	10.01%	2005.8	7.76%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e-37	-8.588e+01	0.0000	1157.0	4.42%	769.2	2.98%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e-36	-8.487e+01	0.0000	5772.0	22.05%	4884.3	18.90%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-36	-8.379e+01	0.0000	2131.0	8.14%	1594.1	6.17%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e-34	-7.974e+01	0.0000	569.0	2.17%	320.8	1.24%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-32	-7.571e+01	0.0000	4094.0	15.64%	3377.8	13.07%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e-30	-7.114e+01	0.0000	1745.0	6.67%	1297.3	5.02%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e-28	-6.637e+01	0.0000	5386.0	20.57%	4617.5	17.87%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e-28	-6.597e+01	0.0000	5846.0	22.33%	5050.3	19.54%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e-28	-6.508e+01	0.0000	5555.0	21.22%	4782.2	18.50%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan et al.)/Homer	CTGTTTAC	1e-27	-6.336e+01	0.0000	6357.0	24.28%	5546.1	21.46%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e-27	-6.228e+01	0.0000	1693.0	6.47%	1278.4	4.95%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-23	-5.399e+01	0.0000	238.0	0.91%	113.4	0.44%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e-23	-5.365e+01	0.0000	2277.0	8.70%	1823.7	7.06%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e-22	-5.238e+01	0.0000	3011.0	11.50%	2492.5	9.64%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e-21	-5.035e+01	0.0000	980.0	3.74%	701.5	2.71%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e-21	-4.997e+01	0.0000	5577.0	21.30%	4891.3	18.93%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e-20	-4.829e+01	0.0000	3367.0	12.86%	2838.1	10.98%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e-19	-4.445e+01	0.0000	1157.0	4.42%	868.5	3.36%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-18	-4.261e+01	0.0000	637.0	2.43%	434.4	1.68%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e-17	-4.061e+01	0.0000	9611.0	36.71%	8828.4	34.16%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-17	-3.968e+01	0.0000	1314.0	5.02%	1020.5	3.95%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e-16	-3.906e+01	0.0000	12423.0	47.46%	11589.4	44.84%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-16	-3.727e+01	0.0000	728.0	2.78%	522.2	2.02%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e-16	-3.708e+01	0.0000	2567.0	9.81%	2160.2	8.36%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	GCTGTGGTTW	1e-15	-3.665e+01	0.0000	2344.0	8.95%	1958.9	7.58%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-15	-3.608e+01	0.0000	2115.0	8.08%	1752.5	6.78%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e-15	-3.497e+01	0.0000	325.0	1.24%	199.0	0.77%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e-15	-3.497e+01	0.0000	325.0	1.24%	199.0	0.77%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-14	-3.362e+01	0.0000	194.0	0.74%	103.4	0.40%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e-14	-3.348e+01	0.0000	2285.0	8.73%	1920.9	7.43%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-13	-3.058e+01	0.0000	2734.0	10.44%	2350.7	9.10%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-13	-3.041e+01	0.0000	2585.0	9.87%	2213.7	8.57%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e-12	-2.992e+01	0.0000	2975.0	11.36%	2578.7	9.98%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-12	-2.929e+01	0.0000	5330.0	20.36%	4805.1	18.59%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e-12	-2.908e+01	0.0000	2192.0	8.37%	1858.2	7.19%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e-12	-2.906e+01	0.0000	265.0	1.01%	163.0	0.63%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-12	-2.897e+01	0.0000	2040.0	7.79%	1719.3	6.65%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-12	-2.893e+01	0.0000	4613.0	17.62%	4126.5	15.97%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-12	-2.841e+01	0.0000	3292.0	12.58%	2884.5	11.16%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e-12	-2.770e+01	0.0000	5016.0	19.16%	4519.2	17.49%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e-11	-2.755e+01	0.0000	4672.0	17.85%	4193.4	16.23%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e-11	-2.542e+01	0.0000	1751.0	6.69%	1473.4	5.70%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e-10	-2.480e+01	0.0000	1558.0	5.95%	1300.5	5.03%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e-10	-2.392e+01	0.0000	445.0	1.70%	318.3	1.23%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e-10	-2.315e+01	0.0000	4492.0	17.16%	4059.4	15.71%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e-9	-2.158e+01	0.0000	2558.0	9.77%	2244.2	8.68%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-9	-2.157e+01	0.0000	686.0	2.62%	532.6	2.06%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e-9	-2.143e+01	0.0000	1726.0	6.59%	1472.0	5.70%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e-9	-2.120e+01	0.0000	6662.0	25.45%	6160.6	23.84%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-9	-2.112e+01	0.0000	1827.0	6.98%	1567.9	6.07%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-9	-2.079e+01	0.0000	2174.0	8.30%	1892.0	7.32%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e-8	-2.054e+01	0.0000	1080.0	4.13%	887.8	3.44%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e-8	-1.963e+01	0.0000	557.0	2.13%	426.5	1.65%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e-8	-1.877e+01	0.0000	5891.0	22.50%	5443.5	21.06%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-8	-1.860e+01	0.0000	3992.0	15.25%	3624.4	14.02%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e-8	-1.856e+01	0.0000	3198.0	12.22%	2870.3	11.11%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e-7	-1.831e+01	0.0000	676.0	2.58%	535.5	2.07%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-7	-1.811e+01	0.0000	3964.0	15.14%	3602.2	13.94%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e-7	-1.809e+01	0.0000	2046.0	7.82%	1790.4	6.93%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e-7	-1.807e+01	0.0000	4123.0	15.75%	3755.0	14.53%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e-7	-1.738e+01	0.0000	3582.0	13.68%	3245.3	12.56%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-7	-1.644e+01	0.0000	1756.0	6.71%	1531.9	5.93%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e-6	-1.560e+01	0.0000	2503.0	9.56%	2238.3	8.66%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e-6	-1.547e+01	0.0000	118.0	0.45%	70.3	0.27%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e-6	-1.501e+01	0.0000	65.0	0.25%	32.2	0.12%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e-6	-1.458e+01	0.0000	2571.0	9.82%	2311.3	8.94%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-6	-1.455e+01	0.0000	6104.0	23.32%	5700.0	22.05%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber et al.)/Homer	GGGGGAATCCCC	1e-6	-1.413e+01	0.0000	770.0	2.94%	637.7	2.47%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-6	-1.382e+01	0.0000	2201.0	8.41%	1968.2	7.62%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	ATTTTCCATT	1e-5	-1.354e+01	0.0000	2795.0	10.68%	2533.0	9.80%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e-5	-1.332e+01	0.0000	1037.0	3.96%	885.8	3.43%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e-5	-1.291e+01	0.0000	5910.0	22.58%	5533.4	21.41%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e-5	-1.288e+01	0.0000	3274.0	12.51%	2996.1	11.59%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e-5	-1.268e+01	0.0000	2803.0	10.71%	2549.0	9.86%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e-5	-1.256e+01	0.0000	2091.0	7.99%	1875.6	7.26%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-5	-1.175e+01	0.0000	703.0	2.69%	588.5	2.28%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e-4	-1.140e+01	0.0000	1756.0	6.71%	1569.5	6.07%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e-4	-1.113e+01	0.0000	1573.0	6.01%	1400.0	5.42%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e-4	-1.099e+01	0.0000	821.0	3.14%	700.7	2.71%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e-4	-1.057e+01	0.0001	1111.0	4.24%	971.3	3.76%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan et al.)/Homer	CCATATATGGNM	1e-4	-1.022e+01	0.0001	894.0	3.42%	772.6	2.99%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e-4	-9.954e+00	0.0001	1162.0	4.44%	1023.1	3.96%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e-4	-9.927e+00	0.0001	2952.0	11.28%	2721.8	10.53%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e-3	-9.082e+00	0.0003	6257.0	23.90%	5928.5	22.94%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e-3	-8.574e+00	0.0005	1173.0	4.48%	1044.6	4.04%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e-3	-8.572e+00	0.0005	1655.0	6.32%	1499.4	5.80%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e-3	-8.143e+00	0.0007	956.0	3.65%	844.9	3.27%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e-3	-7.977e+00	0.0008	366.0	1.40%	301.4	1.17%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e-3	-7.909e+00	0.0009	2483.0	9.49%	2296.4	8.89%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e-3	-7.825e+00	0.0009	5551.0	21.20%	5263.7	20.37%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e-3	-7.503e+00	0.0013	6350.0	24.26%	6047.1	23.40%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e-3	-7.104e+00	0.0019	4062.0	15.52%	3830.5	14.82%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e-3	-7.077e+00	0.0019	684.0	2.61%	599.0	2.32%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e-3	-6.932e+00	0.0022	323.0	1.23%	267.5	1.04%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e-2	-6.545e+00	0.0032	354.0	1.35%	297.3	1.15%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e-2	-6.533e+00	0.0032	2007.0	7.67%	1857.1	7.19%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e-2	-6.371e+00	0.0037	500.0	1.91%	432.8	1.67%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e-2	-6.245e+00	0.0042	1808.0	6.91%	1670.4	6.46%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e-2	-5.964e+00	0.0055	1433.0	5.47%	1315.3	5.09%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-2	-5.591e+00	0.0079	2791.0	10.66%	2625.5	10.16%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e-2	-5.502e+00	0.0085	467.0	1.78%	407.2	1.58%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-2	-5.355e+00	0.0098	1550.0	5.92%	1434.2	5.55%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e-2	-5.217e+00	0.0112	250.0	0.96%	209.2	0.81%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-2	-5.110e+00	0.0123	2343.0	8.95%	2200.3	8.51%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e-2	-5.015e+00	0.0135	805.0	3.08%	728.2	2.82%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e-2	-4.972e+00	0.0140	44.0	0.17%	29.6	0.11%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e-2	-4.624e+00	0.0196	500.0	1.91%	444.9	1.72%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e-1	-4.585e+00	0.0203	1979.0	7.56%	1857.9	7.19%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-1	-4.234e+00	0.0285	1738.0	6.64%	1630.7	6.31%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e-1	-3.736e+00	0.0466	368.0	1.41%	327.1	1.27%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e-1	-3.655e+00	0.0502	917.0	3.50%	849.2	3.29%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-1	-3.606e+00	0.0523	2868.0	10.96%	2736.8	10.59%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong et al.)/Homer	AGGTCANTGACCTB	1e-1	-3.543e+00	0.0554	1476.0	5.64%	1388.3	5.37%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-1	-3.514e+00	0.0566	3398.0	12.98%	3254.8	12.59%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e-1	-3.466e+00	0.0589	1231.0	4.70%	1153.4	4.46%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e-1	-3.365e+00	0.0647	13274.0	50.71%	12959.6	50.14%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e-1	-3.260e+00	0.0714	492.0	1.88%	449.0	1.74%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e-1	-3.205e+00	0.0749	717.0	2.74%	663.1	2.57%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-1	-3.155e+00	0.0782	2639.0	10.08%	2524.0	9.77%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e-1	-3.119e+00	0.0805	440.0	1.68%	400.1	1.55%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e-1	-3.009e+00	0.0893	1408.0	5.38%	1331.8	5.15%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e-1	-2.974e+00	0.0918	711.0	2.72%	660.5	2.56%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e-1	-2.843e+00	0.1039	1467.0	5.60%	1391.2	5.38%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e-1	-2.724e+00	0.1163	317.0	1.21%	287.4	1.11%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e-1	-2.707e+00	0.1175	824.0	3.15%	772.9	2.99%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e-1	-2.679e+00	0.1200	158.0	0.60%	138.2	0.53%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e-1	-2.671e+00	0.1202	5163.0	19.72%	5003.4	19.36%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e-1	-2.618e+00	0.1259	5150.0	19.67%	4992.7	19.32%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e-1	-2.577e+00	0.1302	1566.0	5.98%	1492.6	5.78%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e-1	-2.336e+00	0.1647	749.0	2.86%	705.3	2.73%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-2.266e+00	0.1755	202.0	0.77%	182.0	0.70%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-2.244e+00	0.1784	138.0	0.53%	122.1	0.47%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-1.986e+00	0.2293	6527.0	24.93%	6368.9	24.64%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-1.955e+00	0.2350	2348.0	8.97%	2269.6	8.78%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-1.854e+00	0.2583	702.0	2.68%	667.1	2.58%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e0	-1.739e+00	0.2880	1259.0	4.81%	1211.1	4.69%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-1.736e+00	0.2880	1727.0	6.60%	1668.3	6.46%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-1.731e+00	0.2880	3866.0	14.77%	3764.5	14.57%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-1.721e+00	0.2880	1656.0	6.33%	1599.1	6.19%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-1.706e+00	0.2906	8246.0	31.50%	8073.8	31.24%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-1.676e+00	0.2976	1237.0	4.73%	1191.4	4.61%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-1.495e+00	0.3546	567.0	2.17%	542.0	2.10%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-1.492e+00	0.3546	2061.0	7.87%	2002.6	7.75%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-1.488e+00	0.3546	400.0	1.53%	380.3	1.47%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-1.434e+00	0.3702	184.0	0.70%	172.1	0.67%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-1.429e+00	0.3702	1330.0	5.08%	1288.2	4.98%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-1.417e+00	0.3720	1829.0	6.99%	1777.1	6.88%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-1.410e+00	0.3726	623.0	2.38%	598.5	2.32%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-1.103e+00	0.5036	493.0	1.88%	477.4	1.85%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer	TBGCACGCAA	1e0	-1.044e+00	0.5308	2247.0	8.58%	2201.3	8.52%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-1.043e+00	0.5308	319.0	1.22%	308.7	1.19%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-1.031e+00	0.5318	466.0	1.78%	452.9	1.75%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-9.976e-01	0.5470	1328.0	5.07%	1299.9	5.03%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-9.510e-01	0.5698	662.0	2.53%	646.1	2.50%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-8.913e-01	0.6015	1249.0	4.77%	1225.7	4.74%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-8.176e-01	0.6440	960.0	3.67%	943.6	3.65%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-7.704e-01	0.6714	189.0	0.72%	185.9	0.72%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	-7.535e-01	0.6790	4179.0	15.96%	4121.6	15.95%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e0	-7.208e-01	0.6978	6678.0	25.51%	6591.0	25.50%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-7.098e-01	0.7017	563.0	2.15%	555.9	2.15%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-6.301e-01	0.7558	1546.0	5.91%	1529.6	5.92%
EBNA1(EBV virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-5.911e-01	0.7817	42.0	0.16%	42.1	0.16%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-4.831e-01	0.8662	281.0	1.07%	282.9	1.09%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-4.819e-01	0.8662	289.0	1.10%	290.9	1.13%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-4.800e-01	0.8662	301.0	1.15%	302.5	1.17%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e0	-4.476e-01	0.8834	273.0	1.04%	275.8	1.07%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-4.102e-01	0.9124	349.0	1.33%	352.4	1.36%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-3.807e-01	0.9347	278.0	1.06%	282.4	1.09%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-3.671e-01	0.9427	164.0	0.63%	168.6	0.65%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e0	-3.048e-01	0.9982	11675.0	44.60%	11576.6	44.79%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	-2.722e-01	1.0000	287.0	1.10%	295.7	1.14%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e0	-2.659e-01	1.0000	1844.0	7.04%	1850.2	7.16%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-2.627e-01	1.0000	2409.0	9.20%	2412.7	9.34%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	-2.541e-01	1.0000	4381.0	16.74%	4370.9	16.91%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-2.412e-01	1.0000	361.0	1.38%	371.6	1.44%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-2.108e-01	1.0000	987.0	3.77%	1001.3	3.87%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-1.396e-01	1.0000	194.0	0.74%	207.4	0.80%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e0	-1.311e-01	1.0000	1514.0	5.78%	1538.2	5.95%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-1.265e-01	1.0000	90.0	0.34%	100.6	0.39%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-1.177e-01	1.0000	215.0	0.82%	230.6	0.89%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-1.113e-01	1.0000	1058.0	4.04%	1084.2	4.19%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-1.046e-01	1.0000	580.0	2.22%	603.9	2.34%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-8.897e-02	1.0000	310.0	1.18%	330.9	1.28%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson et al.)/Homer	GYCATCMATCAT	1e0	-8.614e-02	1.0000	172.0	0.66%	188.8	0.73%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-7.397e-02	1.0000	3835.0	14.65%	3869.5	14.97%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-5.447e-02	1.0000	576.0	2.20%	607.4	2.35%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-4.291e-02	1.0000	3094.0	11.82%	3144.8	12.17%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	-3.291e-02	1.0000	59.0	0.23%	73.6	0.28%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-3.087e-02	1.0000	9974.0	38.10%	9992.4	38.66%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-2.823e-02	1.0000	962.0	3.67%	1008.7	3.90%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-2.714e-02	1.0000	216.0	0.83%	242.1	0.94%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-1.161e-02	1.0000	820.0	3.13%	874.7	3.38%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-8.743e-03	1.0000	379.0	1.45%	421.3	1.63%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-7.375e-03	1.0000	3492.0	13.34%	3581.2	13.86%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-6.736e-03	1.0000	1853.0	7.08%	1932.4	7.48%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-6.389e-03	1.0000	75.0	0.29%	97.7	0.38%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-2.508e-03	1.0000	2193.0	8.38%	2291.2	8.87%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-2.320e-03	1.0000	2719.0	10.39%	2824.1	10.93%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-1.804e-03	1.0000	508.0	1.94%	568.6	2.20%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-1.579e-03	1.0000	7966.0	30.43%	8082.3	31.27%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e0	-1.480e-03	1.0000	357.0	1.36%	410.5	1.59%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-9.660e-04	1.0000	46.0	0.18%	69.1	0.27%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-5.000e-04	1.0000	7999.0	30.56%	8140.8	31.50%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-3.070e-04	1.0000	2953.0	11.28%	3091.4	11.96%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-1.850e-04	1.0000	3992.0	15.25%	4148.0	16.05%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e0	-1.380e-04	1.0000	191.0	0.73%	242.6	0.94%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-9.600e-05	1.0000	1199.0	4.58%	1313.0	5.08%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e0	-6.400e-05	1.0000	718.0	2.74%	813.5	3.15%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-2.100e-05	1.0000	835.0	3.19%	945.0	3.66%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-1.000e-06	1.0000	1089.0	4.16%	1232.2	4.77%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-0.000e+00	1.0000	699.0	2.67%	826.5	3.20%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-0.000e+00	1.0000	721.0	2.75%	852.6	3.30%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e0	-0.000e+00	1.0000	1033.0	3.95%	1188.3	4.60%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-0.000e+00	1.0000	6245.0	23.86%	6523.1	25.24%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e0	-0.000e+00	1.0000	1057.0	4.04%	1222.8	4.73%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	-0.000e+00	1.0000	14.0	0.05%	46.2	0.18%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-0.000e+00	1.0000	1927.0	7.36%	2154.3	8.34%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e0	-0.000e+00	1.0000	8200.0	31.32%	8543.9	33.06%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-0.000e+00	1.0000	9565.0	36.54%	9912.5	38.35%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-0.000e+00	1.0000	7427.0	28.37%	7780.9	30.11%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-0.000e+00	1.0000	1888.0	7.21%	2129.5	8.24%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e0	-0.000e+00	1.0000	820.0	3.13%	1004.8	3.89%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-0.000e+00	1.0000	687.0	2.62%	878.3	3.40%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e0	-0.000e+00	1.0000	754.0	2.88%	957.1	3.70%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-0.000e+00	1.0000	511.0	1.95%	704.1	2.72%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	0.000e+00	1.0000	1876.0	7.17%	2330.0	9.02%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e0	0.000e+00	1.0000	1286.0	4.91%	1717.2	6.64%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	0.000e+00	1.0000	7507.0	28.68%	8105.4	31.36%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	0.000e+00	1.0000	5888.0	22.49%	6471.9	25.04%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	0.000e+00	1.0000	1994.0	7.62%	2456.1	9.50%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	0.000e+00	1.0000	4024.0	15.37%	5123.7	19.82%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	0.000e+00	1.0000	1670.0	6.38%	2157.5	8.35%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e0	0.000e+00	1.0000	7216.0	27.57%	8030.7	31.07%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	0.000e+00	1.0000	306.0	1.17%	618.2	2.39%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	0.000e+00	1.0000	1779.0	6.80%	2149.3	8.32%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	0.000e+00	1.0000	1965.0	7.51%	2442.6	9.45%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	0.000e+00	1.0000	1936.0	7.40%	2407.2	9.31%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e0	0.000e+00	1.0000	2079.0	7.94%	2859.0	11.06%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	0.000e+00	1.0000	10754.0	41.08%	11329.9	43.84%