Information for 5-ACATAGGGTG (Motif 12)


Reverse Opposite:

p-value:1e-8
log p-value:-2.032e+01
Information Content per bp:1.746
Number of Target Sequences with motif83.0
Percentage of Target Sequences with motif36.40%
Number of Background Sequences with motif8874.2
Percentage of Background Sequences with motif19.38%
Average Position of motif in Targets908.7 +/- 540.5bp
Average Position of motif in Background986.6 +/- 630.1bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.26
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0143.3_Sox2/Jaspar

Match Rank:1
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-ACATAGGGTG
AACAAAGG---

MA0514.1_Sox3/Jaspar

Match Rank:2
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---ACATAGGGTG
AAAACAAAGG---

MA0033.1_FOXL1/Jaspar

Match Rank:3
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---ACATAGGGTG
TATACATA-----

Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer

Match Rank:4
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-ACATAGGGTG
AACAKATGGY-

MA0109.1_Hltf/Jaspar

Match Rank:5
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:ACATAGGGTG
NNATAAGGNN

PB0128.1_Gcm1_2/Jaspar

Match Rank:6
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---ACATAGGGTG----
TGCGCATAGGGGAGGAG

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:7
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-ACATAGGGTG
RACAAWGG---

PB0161.1_Rxra_2/Jaspar

Match Rank:8
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--ACATAGGGTG----
TCGCGAAGGTTGTACT

MA0035.3_Gata1/Jaspar

Match Rank:9
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--ACATAGGGTG
ANAGATAAGAA-

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:10
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---ACATAGGGTG
GGAACAAAGR---