Information for 6-RAGCGAWCAT (Motif 13)


Reverse Opposite:

p-value:1e-8
log p-value:-1.999e+01
Information Content per bp:1.578
Number of Target Sequences with motif35.0
Percentage of Target Sequences with motif15.35%
Number of Background Sequences with motif2227.5
Percentage of Background Sequences with motif4.86%
Average Position of motif in Targets946.4 +/- 533.6bp
Average Position of motif in Background985.3 +/- 668.7bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.09
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0041.1_Foxd3/Jaspar

Match Rank:1
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:RAGCGAWCAT--
AAACAAACATTC

MA0070.1_PBX1/Jaspar

Match Rank:2
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-RAGCGAWCAT-
CCATCAATCAAA

Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer

Match Rank:3
Score:0.61
Offset:-6
Orientation:forward strand
Alignment:------RAGCGAWCAT-
NNNVCTGWGYAAACASN

FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:4
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-RAGCGAWCAT
AAAGTAAACA-

MA0148.3_FOXA1/Jaspar

Match Rank:5
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--RAGCGAWCAT---
CAAAGTAAACANNNN

FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer

Match Rank:6
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-RAGCGAWCAT
AAAGTAAACA-

MF0005.1_Forkhead_class/Jaspar

Match Rank:7
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:RAGCGAWCAT
AAATAAACA-

PH0037.1_Hdx/Jaspar

Match Rank:8
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---RAGCGAWCAT----
AAGGCGAAATCATCGCA

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson et al.)/Homer

Match Rank:9
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--RAGCGAWCAT
GYCATCMATCAT

MA0042.1_FOXI1/Jaspar

Match Rank:10
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:RAGCGAWCAT--
AAACAAACANNC