Information for 1-CGCGCGCC (Motif 2)


Reverse Opposite:

p-value:1e-12
log p-value:-2.799e+01
Information Content per bp:1.831
Number of Target Sequences with motif117.0
Percentage of Target Sequences with motif51.32%
Number of Background Sequences with motif13166.4
Percentage of Background Sequences with motif28.75%
Average Position of motif in Targets1597.6 +/- 398.0bp
Average Position of motif in Background1035.9 +/- 669.6bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)2.27
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0008.1_E2F2_1/Jaspar

Match Rank:1
Score:0.89
Offset:-2
Orientation:reverse strand
Alignment:--CGCGCGCC-----
NTCGCGCGCCTTNNN

PB0009.1_E2F3_1/Jaspar

Match Rank:2
Score:0.89
Offset:-2
Orientation:reverse strand
Alignment:--CGCGCGCC-----
ANCGCGCGCCCTTNN

POL006.1_BREu/Jaspar

Match Rank:3
Score:0.82
Offset:0
Orientation:forward strand
Alignment:CGCGCGCC
AGCGCGCC

PB0095.1_Zfp161_1/Jaspar

Match Rank:4
Score:0.82
Offset:-5
Orientation:reverse strand
Alignment:-----CGCGCGCC---
NCANGCGCGCGCGCCA

PB0199.1_Zfp161_2/Jaspar

Match Rank:5
Score:0.67
Offset:-6
Orientation:reverse strand
Alignment:------CGCGCGCC
NNGCNCTGCGCGGC

MA0024.2_E2F1/Jaspar

Match Rank:6
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---CGCGCGCC
CCTCCCGCCCN

MA0006.1_Arnt::Ahr/Jaspar

Match Rank:7
Score:0.61
Offset:0
Orientation:forward strand
Alignment:CGCGCGCC
TGCGTG--

PB0052.1_Plagl1_1/Jaspar

Match Rank:8
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---CGCGCGCC-----
TTGGGGGCGCCCCTAG

PB0147.1_Max_2/Jaspar

Match Rank:9
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----CGCGCGCC--
NNGTCGCGTGNCAC

PB0164.1_Smad3_2/Jaspar

Match Rank:10
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---CGCGCGCC------
TACGCCCCGCCACTCTG